Detailed information NTG0212161

Bioinformatically predicted

Overview

• Name: sbcB
• Type: Machinery gene
• Locus tag: A4V61_RS00590
• Genome accession: NZ_CP024260
• Coordinates: 135429..136856 (-)
• Length: 475 a.a.
• NCBI ID: WP_001394442.1
• Uniprot ID: -
• Organism: Escherichia coli strain F5656C1
• Function: promote homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 130429..141856

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
A4V61_RS00560	yeeZ	130484..131308 (+)	825	WP_000754737.1	SDR family oxidoreductase	-
A4V61_RS00565	yeeY	131354..132283 (+)	930	WP_000803360.1	LysR substrate-binding domain-containing protein	-
A4V61_RS00570	yoeI	132498..132560 (+)	63	WP_010723108.1	membrane protein YoeI	-
A4V61_RS00575	plaP	132550..133908 (+)	1359	WP_000019197.1	putrescine/proton symporter PlaP	-
A4V61_RS00580	tsuA	134087..135145 (+)	1059	WP_000492346.1	thiosulfate utilization transporter TsuA/YeeE	-
A4V61_RS00585	tsuB	135159..135386 (+)	228	WP_000985273.1	thiosulfate utilization sulfurtransferase TsuB/YeeD	-
A4V61_RS00590	sbcB	135429..136856 (-)	1428	WP_001394442.1	exodeoxyribonuclease I	Machinery gene
A4V61_RS00600	dacD	138404..139567 (+)	1164	WP_032145576.1	serine-type D-Ala-D-Ala carboxypeptidase DacD	-
A4V61_RS00605	sbmC	139686..140159 (+)	474	WP_001394439.1	DNA gyrase inhibitor SbmC	-
A4V61_RS00610	yeeA	140357..141415 (+)	1059	WP_001200905.1	FUSC family protein	-

Sequence

Protein

• Length: 475 a.a.
• Molecular weight: 54514.84 Da
• Isoelectric Point: 5.4700

>NTDB_id=212161 A4V61_RS00590 WP_001394442.1 135429..136856(-) (sbcB) [Escherichia coli strain F5656C1]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EATFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDKAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMIIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide

• Length: 1428 bp

>NTDB_id=212161 A4V61_RS00590 WP_001394442.1 135429..136856(-) (sbcB) [Escherichia coli strain F5656C1]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGAACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACTGATAACGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCACGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCAGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAAAG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTAAAAATTCTGCGTGAAAATCCGCAAGTGCGCGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGCGCAGCAATGATAATTGTGCTGGAAACCGAGCCACGTAATTTACCGGCACTGGATATCACTTTTGTCGAT
AAACGGATTGAAAAGCTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTACAGGGTTATGCAGATGAATTGCAGATGCTGGCACAACAAT
ATGCCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTAA

Domains

Predicted by InterProScan.

• Exonuclease C-terminal (ExoI_SH3) (212-472)

• Exonuclease (RNase_T) (13-188)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
sbcB	Vibrio cholerae O1 biovar El Tor strain E7946	58.936	98.947	0.583