Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   BEI49_RS21610 Genome accession   NZ_CP018933
Coordinates   3978164..3979207 (-) Length   347 a.a.
NCBI ID   WP_001013197.1    Uniprot ID   A0AAE9TCD1
Organism   Bacillus cereus strain ISSFR-9F     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3973164..3984207
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BEI49_RS21565 - 3973591..3973791 (-) 201 WP_000106081.1 YqzE family protein -
  BEI49_RS21570 aroK 3973830..3974327 (-) 498 WP_000836640.1 shikimate kinase AroK -
  BEI49_RS21575 - 3974448..3975098 (-) 651 WP_000183878.1 2OG-Fe(II) oxygenase -
  BEI49_RS21580 comGG 3975274..3975645 (-) 372 WP_001231192.1 competence type IV pilus minor pilin ComGG -
  BEI49_RS21585 comGF 3975642..3976112 (-) 471 WP_000923094.1 competence type IV pilus minor pilin ComGF -
  BEI49_RS21590 comGE 3976082..3976384 (-) 303 WP_000829456.1 competence type IV pilus minor pilin ComGE -
  BEI49_RS21595 comGD 3976377..3976832 (-) 456 WP_000810395.1 comG operon protein ComGD -
  BEI49_RS21600 comGC 3976829..3977128 (-) 300 WP_001178696.1 comG operon protein ComGC -
  BEI49_RS21605 comGB 3977140..3978171 (-) 1032 WP_000471910.1 comG operon protein ComGB -
  BEI49_RS21610 comGA 3978164..3979207 (-) 1044 WP_001013197.1 competence protein ComGA Machinery gene
  BEI49_RS21615 - 3979413..3980108 (+) 696 WP_075396043.1 helix-turn-helix transcriptional regulator -
  BEI49_RS21620 - 3980234..3980476 (+) 243 WP_000440711.1 DUF2626 domain-containing protein -
  BEI49_RS21625 - 3980584..3981978 (+) 1395 WP_001094329.1 L-cystine transporter -
  BEI49_RS21630 - 3982154..3982561 (-) 408 WP_075396044.1 hypothetical protein -
  BEI49_RS21635 - 3982649..3982864 (-) 216 WP_001008320.1 DUF3912 family protein -
  BEI49_RS21640 - 3983117..3983428 (+) 312 WP_001093243.1 hypothetical protein -
  BEI49_RS21645 - 3983465..3983953 (-) 489 WP_000764252.1 hypothetical protein -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 39397.95 Da        Isoelectric Point: 9.0635

>NTDB_id=212149 BEI49_RS21610 WP_001013197.1 3978164..3979207(-) (comGA) [Bacillus cereus strain ISSFR-9F]
MNGIESFANMILKEACRVQASDLHIVPRQKDVVVQLRIGKDLMTKYCIEKEFGEKLVSHFKFLASMDIGERRKPQNGSLY
LQMDGQEVYLRLSTLPTVYQESLVIRLHLQASIQPLSHLSLFPSTAKILLSFLRYSHGLLVFTGPTGSGKTTTMYALLEV
IRKKKTRRIVTLEDPVEKRNDDVLQIQINEKAGITYEAGLKAILRHDPDVILVGEIRDEETAKIAIRASLTGHLVMTTLH
TNDARGAILRFMDFGITRQEIEQSLLAIAAQRLVELKCPFCKRKCSTLCKSMRQVRQASIYELLYGYELKQAIKEANGEC
VTYKHETLQSSIRKGYALGFLEEDVYV

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=212149 BEI49_RS21610 WP_001013197.1 3978164..3979207(-) (comGA) [Bacillus cereus strain ISSFR-9F]
ATGAATGGAATTGAAAGCTTTGCGAATATGATTTTGAAAGAAGCGTGCAGGGTACAAGCGTCGGACTTACATATTGTGCC
CCGGCAGAAGGATGTAGTGGTTCAGCTGCGTATAGGAAAAGATTTAATGACGAAATACTGTATTGAAAAGGAATTTGGAG
AAAAACTTGTTTCACACTTTAAATTTTTAGCATCTATGGATATAGGGGAGAGGCGGAAGCCACAAAATGGTTCACTGTAT
TTACAAATGGATGGACAAGAAGTGTATTTGCGCCTTTCCACGCTTCCAACCGTATACCAAGAAAGTCTCGTTATTCGTCT
TCATTTACAAGCATCTATTCAGCCGTTATCTCATCTTTCGTTATTTCCAAGTACAGCGAAGATACTACTTTCTTTTTTAC
GTTATTCTCATGGATTACTCGTATTTACTGGACCGACTGGTTCGGGGAAGACAACAACAATGTATGCATTATTAGAGGTA
ATTAGAAAAAAGAAAACACGTCGCATTGTTACACTGGAAGATCCAGTTGAAAAAAGAAATGACGATGTATTACAAATTCA
AATAAATGAAAAAGCAGGTATCACATATGAGGCTGGACTAAAGGCTATTTTGCGTCATGATCCAGATGTTATTTTAGTCG
GTGAAATTCGTGATGAAGAAACAGCGAAAATTGCTATAAGAGCAAGTTTGACTGGCCATTTAGTAATGACGACATTGCAT
ACGAATGATGCGAGAGGGGCGATACTTCGGTTCATGGATTTTGGCATAACGAGGCAAGAAATCGAACAATCTTTATTAGC
TATAGCTGCACAGCGACTTGTCGAATTAAAGTGTCCGTTTTGCAAAAGAAAGTGCTCAACTTTATGCAAATCAATGAGGC
AAGTAAGGCAAGCGAGTATTTATGAGTTGTTATATGGATATGAGTTAAAACAAGCGATTAAAGAAGCAAACGGGGAATGT
GTCACATACAAGCACGAAACATTACAATCTTCGATACGAAAAGGATACGCTTTAGGGTTTTTAGAAGAAGATGTTTATGT
TTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(10-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Bacillus subtilis subsp. subtilis str. 168

57.925

100

0.579

Multiple sequence alignment