Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   BEI49_RS06520 Genome accession   NZ_CP018933
Coordinates   1214595..1214918 (-) Length   107 a.a.
NCBI ID   WP_000578878.1    Uniprot ID   A0A6L7H7A6
Organism   Bacillus cereus strain ISSFR-9F     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 1209595..1219918
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BEI49_RS06495 - 1209869..1211155 (+) 1287 WP_072181151.1 D-alanyl-D-alanine carboxypeptidase family protein -
  BEI49_RS06500 sipW 1211350..1211919 (+) 570 WP_000767813.1 signal peptidase I SipW -
  BEI49_RS06505 - 1211982..1212569 (+) 588 WP_000172840.1 CalY family protein -
  BEI49_RS06510 - 1212731..1213528 (+) 798 WP_000917468.1 DUF4047 domain-containing protein -
  BEI49_RS06515 calY 1213926..1214519 (+) 594 WP_000053731.1 biofilm matrix protein CalY -
  BEI49_RS06520 sinR 1214595..1214918 (-) 324 WP_000578878.1 helix-turn-helix domain-containing protein Regulator
  BEI49_RS06525 - 1214998..1215132 (-) 135 WP_000276214.1 anti-repressor SinI family protein -
  BEI49_RS06530 inhA1 1215476..1217863 (+) 2388 WP_001035926.1 M6 family metalloprotease immune inhibitor InhA1 -
  BEI49_RS06535 - 1218035..1219402 (+) 1368 WP_000116799.1 aldehyde dehydrogenase -

Sequence

Protein


Download         Length: 107 a.a.        Molecular weight: 12319.17 Da        Isoelectric Point: 9.6244

>NTDB_id=212136 BEI49_RS06520 WP_000578878.1 1214595..1214918(-) (sinR) [Bacillus cereus strain ISSFR-9F]
MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDTLLHDETTKEANLDSEWTQLV
KDAMNSGVSKEQFREFLEFTKWKQNQK

Nucleotide


Download         Length: 324 bp        

>NTDB_id=212136 BEI49_RS06520 WP_000578878.1 1214595..1214918(-) (sinR) [Bacillus cereus strain ISSFR-9F]
ATGATTGGAGAACGTATAAAACGCCTTCGTTTACAAAAAGGTATTTCATTAACTGAACTTGCTGAAAAAGCTGGCGTTGC
TAAATCTTACATTAGTTCTATAGAACGAAATTTACAAAAGAACCCTTCCATTCAGTTTCTTGAAAAGATCGCAGCAGTTC
TACAAATTCCAGTTGATACTTTACTTCATGATGAAACAACAAAGGAAGCTAACCTAGACTCCGAATGGACACAGCTCGTC
AAAGATGCAATGAACTCTGGTGTCTCCAAAGAACAATTTCGTGAATTTCTTGAATTTACAAAATGGAAGCAAAATCAAAA
ATAA

Domains

Predicted by InterproScan.

Anti-repressor SinI (SinI)

(72-99)

Helix-turn-helix (HTH_3)

(6-60)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6L7H7A6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

67.89

100

0.692

Multiple sequence alignment