Detailed information NTG0021212

Bioinformatically predicted

Overview

• Name: radA/sms
• Type: Machinery gene
• Locus tag: VC_RS11280
• Genome accession: NC_002505
• Coordinates: 2497754..2499130 (-)
• Length: 458 a.a.
• NCBI ID: WP_032074635.1
• Uniprot ID: -
• Organism: Vibrio cholerae O1 biovar El Tor str. N16961
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2492754..2504130

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
VC_RS11270 (VC2341)	-	2493597..2495282 (+)	1686	WP_000615853.1	AMP-binding protein	-
VC_RS11275 (VC2342)	fusA	2495396..2497483 (-)	2088	WP_000774533.1	elongation factor G	-
VC_RS11280 (VC2343)	radA/sms	2497754..2499130 (-)	1377	WP_032074635.1	DNA repair protein RadA	Machinery gene
VC_RS11285 (VC2344)	-	2499261..2501600 (+)	2340	WP_001187860.1	PilZ domain-containing protein	-
VC_RS11290 (VC2345)	serB	2501805..2502785 (-)	981	WP_000339682.1	phosphoserine phosphatase	-
VC_RS11295 (VC2346)	-	2502888..2503511 (+)	624	WP_000349089.1	YtjB family periplasmic protein	-

Sequence

Protein

• Length: 458 a.a.
• Molecular weight: 49297.90 Da
• Isoelectric Point: 7.6828

>NTDB_id=21212 VC_RS11280 WP_032074635.1 2497754..2499130(-) (radA/sms) [Vibrio cholerae O1 biovar El Tor str. N16961]
MVKAKRAYVCNECGADFPRWQGQCNACGSWNSISEVRLAASPQVARNERLVGYAGALEAKVQTLADIDLQEVPRFTSGFK
ELDRVLGGGIVPGAAILIGGNPGAGKSTLLLQTMCLLSGQMPTLYVTGEESLQQVAMRASRLGLPKQHLKMLSETNVDRI
CQIAEQEKPRIMVIDSIQVMHVADVQSSPGSVAQVRESATALTRYAKQNNVAVFIVGHVTKDGTLAGPKVLEHIIDCSIL
LDGDTDSRFRTLRSHKNRFGAVNELGVFAMTGQGMREVSNPSAIFLSRGEEATSGSSVMVVWEGTRPLLVEIQALVDYSQ
LANPRRVAVGLEQNRLSLLLAVLHKHGGLQMADQDVFVNVVGGVKVTETSADLALLMALLSSFRDRPLPKDVVVFGEVGL
AGEIRPVPSGQERLNEAFKHGFKKAIVPIANMPKGGIEGMQIHGVKKLSDAIAAFDEL

Nucleotide

• Length: 1377 bp

>NTDB_id=21212 VC_RS11280 WP_032074635.1 2497754..2499130(-) (radA/sms) [Vibrio cholerae O1 biovar El Tor str. N16961]
ATTGTGAAAGCTAAGCGCGCCTATGTATGTAATGAATGTGGAGCGGATTTTCCGCGTTGGCAAGGACAGTGTAATGCCTG
TGGTTCGTGGAATTCGATTTCAGAAGTTCGTTTAGCGGCTTCACCGCAAGTGGCGCGCAATGAAAGGTTGGTCGGTTATG
CGGGAGCCCTTGAAGCGAAAGTACAAACTTTGGCTGATATTGATTTACAAGAAGTGCCTCGATTCACCAGTGGCTTTAAA
GAACTAGATCGCGTACTCGGCGGCGGAATTGTGCCGGGTGCGGCGATTTTGATTGGTGGTAATCCGGGCGCGGGTAAATC
GACCTTACTACTGCAAACCATGTGTTTACTTTCCGGACAAATGCCGACGTTGTACGTGACGGGCGAAGAATCGTTGCAGC
AGGTCGCGATGCGTGCTTCACGGCTTGGTTTGCCGAAACAGCATCTAAAAATGCTCTCAGAAACCAATGTGGATCGGATT
TGCCAGATTGCTGAGCAAGAAAAGCCGCGCATTATGGTCATCGATTCGATCCAAGTGATGCATGTGGCGGATGTGCAATC
GTCGCCGGGGAGTGTCGCGCAAGTGCGTGAATCGGCCACGGCGCTTACGCGTTATGCCAAACAAAATAATGTGGCGGTAT
TTATTGTGGGCCACGTAACCAAAGATGGTACGTTGGCGGGACCTAAAGTTCTTGAACACATCATCGATTGCTCGATTCTG
CTTGATGGTGATACAGACAGTCGTTTTCGTACACTTCGTAGTCATAAAAACCGTTTTGGTGCGGTCAATGAACTCGGTGT
GTTTGCGATGACTGGACAAGGGATGCGTGAGGTGAGTAATCCATCGGCGATTTTCCTTTCTCGTGGAGAAGAAGCCACAT
CTGGTAGCTCAGTGATGGTGGTGTGGGAAGGAACTCGCCCACTCTTAGTCGAGATTCAAGCTTTGGTCGATTACTCACAA
CTCGCTAACCCAAGACGCGTTGCGGTTGGCTTAGAACAAAACCGTCTCTCTTTATTACTGGCCGTGCTGCATAAACACGG
TGGTTTGCAAATGGCTGATCAGGATGTGTTTGTGAACGTAGTCGGTGGTGTGAAAGTGACGGAGACCAGTGCAGATTTAG
CGCTACTCATGGCGTTATTGTCGAGTTTTCGTGATCGTCCGCTGCCAAAAGATGTCGTGGTTTTTGGTGAAGTCGGATTG
GCTGGAGAAATTCGTCCCGTACCGAGTGGTCAAGAGCGCCTTAACGAAGCCTTCAAACATGGTTTTAAGAAAGCGATTGT
GCCGATTGCCAATATGCCGAAAGGTGGTATTGAAGGTATGCAGATCCACGGTGTGAAAAAGCTTTCTGATGCGATCGCGG
CTTTTGATGAGCTGTAA

Domains

Predicted by InterProScan.

• Subunit ChlI of Mg-chelatase (ChlI) (346-431)

• AAA domain (AAA_25) (81-223)

• Rubredoxin metal binding domain (Zn_ribbon_LapB) (8-35)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
radA/sms	Bacillus subtilis subsp. subtilis str. 168	43.818	100	0.441
radA	Streptococcus mitis NCTC 12261	45.093	93.45	0.421
radA	Streptococcus pneumoniae Rx1	45.093	93.45	0.421
radA	Streptococcus pneumoniae D39	45.093	93.45	0.421
radA	Streptococcus pneumoniae R6	45.093	93.45	0.421
radA	Streptococcus pneumoniae TIGR4	45.093	93.45	0.421
radA	Streptococcus mitis SK321	45.093	93.45	0.421