Detailed information NTG0212111

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: COG37_RS06985
• Genome accession: NZ_CP024257
• Coordinates: 1361493..1362485 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli O25:H16 strain F5505-C1
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1356493..1367485

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
COG37_RS06955	ispD	1356554..1357264 (+)	711	WP_000246135.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
COG37_RS06960	ispF	1357264..1357743 (+)	480	WP_001735626.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
COG37_RS06965	truD	1357740..1358789 (+)	1050	WP_000568946.1	tRNA pseudouridine(13) synthase TruD	-
COG37_RS06970	surE	1358770..1359531 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
COG37_RS06975	pcm	1359525..1360151 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
COG37_RS06980	nlpD	1360336..1361430 (+)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
COG37_RS06985	rpoS	1361493..1362485 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
COG37_RS06990	ygbN	1362579..1363943 (-)	1365	WP_001735624.1	GntP family transporter	-
COG37_RS06995	ygbM	1364032..1364808 (-)	777	WP_001136934.1	HPr family phosphocarrier protein	-
COG37_RS27425	-	1364813..1364926 (-)	114	Protein_1284	hypothetical protein	-
COG37_RS07005	-	1365695..1365826 (-)	132	Protein_1286	serine/threonine protein phosphatase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=212111 COG37_RS06985 WP_000081550.1 1361493..1362485(+) (rpoS) [Escherichia coli O25:H16 strain F5505-C1]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=212111 COG37_RS06985 WP_000081550.1 1361493..1362485(+) (rpoS) [Escherichia coli O25:H16 strain F5505-C1]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGTGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715