Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   BEI48_RS22030 Genome accession   NZ_CP018931
Coordinates   4043897..4044220 (+) Length   107 a.a.
NCBI ID   WP_000578878.1    Uniprot ID   A0A6L7H7A6
Organism   Bacillus cereus strain ISSFR-3F     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 4038897..4049220
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BEI48_RS22015 - 4039413..4040780 (-) 1368 WP_000116799.1 aldehyde dehydrogenase -
  BEI48_RS22020 inhA1 4040952..4043339 (-) 2388 WP_001035926.1 M6 family metalloprotease immune inhibitor InhA1 -
  BEI48_RS22025 - 4043683..4043817 (+) 135 WP_000276214.1 anti-repressor SinI family protein -
  BEI48_RS22030 sinR 4043897..4044220 (+) 324 WP_000578878.1 helix-turn-helix domain-containing protein Regulator
  BEI48_RS22035 calY 4044296..4044889 (-) 594 WP_000053731.1 biofilm matrix protein CalY -
  BEI48_RS22040 - 4045287..4046084 (-) 798 WP_000917468.1 DUF4047 domain-containing protein -
  BEI48_RS22045 - 4046246..4046833 (-) 588 WP_000172840.1 CalY family protein -
  BEI48_RS22050 sipW 4046896..4047465 (-) 570 WP_000767813.1 signal peptidase I SipW -
  BEI48_RS22055 - 4047660..4048946 (-) 1287 WP_072181151.1 D-alanyl-D-alanine carboxypeptidase family protein -

Sequence

Protein


Download         Length: 107 a.a.        Molecular weight: 12319.17 Da        Isoelectric Point: 9.6244

>NTDB_id=212107 BEI48_RS22030 WP_000578878.1 4043897..4044220(+) (sinR) [Bacillus cereus strain ISSFR-3F]
MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDTLLHDETTKEANLDSEWTQLV
KDAMNSGVSKEQFREFLEFTKWKQNQK

Nucleotide


Download         Length: 324 bp        

>NTDB_id=212107 BEI48_RS22030 WP_000578878.1 4043897..4044220(+) (sinR) [Bacillus cereus strain ISSFR-3F]
ATGATTGGAGAACGTATAAAACGCCTTCGTTTACAAAAAGGTATTTCATTAACTGAACTTGCTGAAAAAGCTGGCGTTGC
TAAATCTTACATTAGTTCTATAGAACGAAATTTACAAAAGAACCCTTCCATTCAGTTTCTTGAAAAGATCGCAGCAGTTC
TACAAATTCCAGTTGATACTTTACTTCATGATGAAACAACAAAGGAAGCTAACCTAGACTCCGAATGGACACAGCTCGTC
AAAGATGCAATGAACTCTGGTGTCTCCAAAGAACAATTTCGTGAATTTCTTGAATTTACAAAATGGAAGCAAAATCAAAA
ATAA

Domains

Predicted by InterproScan.

Anti-repressor SinI (SinI)

(72-99)

Helix-turn-helix (HTH_3)

(6-60)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6L7H7A6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

67.89

100

0.692

Multiple sequence alignment