Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   BEI48_RS20635 Genome accession   NZ_CP018931
Coordinates   3798795..3799397 (+) Length   200 a.a.
NCBI ID   WP_000155594.1    Uniprot ID   Q81SS2
Organism   Bacillus cereus strain ISSFR-3F     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3793795..3804397
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BEI48_RS20590 gpsB 3794034..3794372 (-) 339 WP_000622430.1 cell division regulator GpsB -
  BEI48_RS20595 - 3794470..3795024 (-) 555 WP_000862923.1 DUF1273 domain-containing protein -
  BEI48_RS20600 - 3795081..3795506 (-) 426 WP_000546265.1 CotD family spore coat protein -
  BEI48_RS20605 - 3795662..3796141 (-) 480 WP_001989799.1 YppG family protein -
  BEI48_RS20610 - 3796319..3796510 (+) 192 WP_000242663.1 YppF family protein -
  BEI48_RS20615 - 3796536..3796880 (-) 345 WP_000872959.1 YppE family protein -
  BEI48_RS20620 - 3796896..3797138 (-) 243 WP_001252043.1 hypothetical protein -
  BEI48_RS29595 - 3797224..3797400 (+) 177 WP_001982922.1 hypothetical protein -
  BEI48_RS20630 - 3797666..3798691 (-) 1026 WP_000495640.1 DUF2515 domain-containing protein -
  BEI48_RS20635 recU 3798795..3799397 (+) 603 WP_000155594.1 Holliday junction resolvase RecU Machinery gene
  BEI48_RS20640 - 3799463..3802156 (+) 2694 WP_001283116.1 PBP1A family penicillin-binding protein -
  BEI48_RS20645 - 3802180..3802698 (-) 519 WP_000442686.1 YpoC family protein -
  BEI48_RS20650 nth 3802702..3803349 (-) 648 WP_000933025.1 endonuclease III -
  BEI48_RS20655 dnaD 3803365..3804072 (-) 708 WP_000728549.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 23342.66 Da        Isoelectric Point: 9.5601

>NTDB_id=212105 BEI48_RS20635 WP_000155594.1 3798795..3799397(+) (recU) [Bacillus cereus strain ISSFR-3F]
MTIRYPNGKRYNQASQPHKTPIKKHTYSNRGMSLEEELNETNEYYLTHNIACVHKKPTPLQIVKVDYPARSAAVVKEAYF
KQPSTTDYNGVYKGKYIDFEAKETKNKTSFPLQNFHLHQIEHMKQVIAHNGIAFVIIKFTLFDELYLLDAKHIITFWNRQ
NTGGRKSITKEEIVEHGSLLSCGYHPRIDYIRVLDTVYFS

Nucleotide


Download         Length: 603 bp        

>NTDB_id=212105 BEI48_RS20635 WP_000155594.1 3798795..3799397(+) (recU) [Bacillus cereus strain ISSFR-3F]
ATGACCATTCGTTACCCAAATGGAAAACGGTACAATCAAGCTTCACAACCTCATAAAACACCAATTAAAAAACATACTTA
TAGTAACAGAGGTATGTCCCTTGAAGAGGAATTGAATGAAACAAATGAATATTACTTAACCCATAATATTGCATGTGTAC
ATAAAAAACCTACACCTCTTCAAATTGTAAAAGTAGATTACCCCGCTCGAAGTGCTGCAGTGGTAAAAGAGGCGTATTTT
AAACAACCTTCTACAACAGATTACAACGGTGTATATAAAGGGAAATACATCGATTTTGAAGCGAAAGAAACAAAAAATAA
AACCAGCTTTCCACTTCAAAACTTCCACCTTCATCAAATTGAACATATGAAGCAAGTAATTGCTCATAATGGAATTGCAT
TTGTTATTATTAAATTTACACTTTTTGATGAACTTTATTTATTAGATGCAAAACATATTATTACATTTTGGAATCGTCAA
AATACTGGTGGACGAAAATCGATTACGAAAGAAGAAATAGTAGAGCATGGATCTTTATTATCATGCGGTTATCACCCTCG
GATTGATTATATCCGTGTACTAGACACGGTTTATTTTTCGTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(30-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q81SS2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

62.5

100

0.625

Multiple sequence alignment