Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   BEI48_RS18615 Genome accession   NZ_CP018931
Coordinates   3412351..3412638 (-) Length   95 a.a.
NCBI ID   WP_000648331.1    Uniprot ID   A0A2A8KZX2
Organism   Bacillus cereus strain ISSFR-3F     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 3407351..3417638
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BEI48_RS18585 - 3407665..3408012 (+) 348 WP_000426313.1 DUF4257 domain-containing protein -
  BEI48_RS18590 - 3408097..3408321 (+) 225 WP_000162601.1 hypothetical protein -
  BEI48_RS18595 - 3408510..3409685 (-) 1176 WP_075395537.1 MFS transporter -
  BEI48_RS18600 - 3409734..3410669 (-) 936 WP_000877936.1 aldo/keto reductase -
  BEI48_RS18605 - 3410777..3411085 (+) 309 WP_075395538.1 ArsR/SmtB family transcription factor -
  BEI48_RS18610 - 3411126..3412076 (-) 951 WP_001089035.1 serine protease -
  BEI48_RS18615 abrB 3412351..3412638 (-) 288 WP_000648331.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  BEI48_RS18620 - 3412755..3414635 (-) 1881 WP_075395539.1 FtsX-like permease family protein -
  BEI48_RS18625 nadE 3414907..3415725 (+) 819 WP_000174880.1 ammonia-dependent NAD(+) synthetase -
  BEI48_RS18630 - 3415773..3416234 (-) 462 WP_000024996.1 NUDIX hydrolase -
  BEI48_RS18635 - 3416266..3416463 (-) 198 WP_001048092.1 DUF4083 domain-containing protein -

Sequence

Protein


Download         Length: 95 a.a.        Molecular weight: 10645.40 Da        Isoelectric Point: 6.3179

>NTDB_id=212104 BEI48_RS18615 WP_000648331.1 3412351..3412638(-) (abrB) [Bacillus cereus strain ISSFR-3F]
MKATGVIRKVDELGRIVIPKELRDVLGIQIKSPLEIFVEEDKVILQKYQPYNACQITGDVSNQNISLANGNITVSIDGAK
YLIKEIEKFLNKSEV

Nucleotide


Download         Length: 288 bp        

>NTDB_id=212104 BEI48_RS18615 WP_000648331.1 3412351..3412638(-) (abrB) [Bacillus cereus strain ISSFR-3F]
ATGAAAGCAACAGGAGTTATTCGAAAAGTAGACGAATTAGGACGAATTGTTATTCCTAAAGAATTACGTGATGTATTGGG
AATACAAATCAAATCACCGCTTGAAATTTTCGTAGAAGAAGACAAAGTCATTTTACAAAAATATCAACCTTACAATGCTT
GTCAAATAACAGGTGATGTTTCAAATCAAAACATATCATTAGCAAATGGAAACATTACTGTTAGTATAGATGGAGCGAAA
TATTTAATAAAAGAAATAGAGAAGTTTTTAAACAAGAGTGAGGTTTAG

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-49)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

54.444

94.737

0.516

Multiple sequence alignment