Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   COG37_RS01625 Genome accession   NZ_CP024257
Coordinates   323348..324016 (+) Length   222 a.a.
NCBI ID   WP_001297375.1    Uniprot ID   P65957
Organism   Escherichia coli O25:H16 strain F5505-C1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 318348..329016
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  COG37_RS01590 yicC 318367..319230 (-) 864 WP_000621336.1 YicC/YloC family endoribonuclease -
  COG37_RS01600 rph 319357..320073 (+) 717 WP_001247089.1 ribonuclease PH -
  COG37_RS01605 pyrE 320139..320780 (+) 642 WP_000806177.1 orotate phosphoribosyltransferase -
  COG37_RS01610 slmA 320817..321413 (-) 597 WP_000818601.1 nucleoid occlusion factor SlmA -
  COG37_RS01615 dut 321520..321978 (-) 459 WP_000976070.1 dUTP diphosphatase -
  COG37_RS01620 coaBC 321956..323176 (-) 1221 WP_000050139.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  COG37_RS01625 radC 323348..324016 (+) 669 WP_001297375.1 DNA repair protein RadC Machinery gene
  COG37_RS01630 rpmB 324233..324469 (+) 237 WP_000091955.1 50S ribosomal protein L28 -
  COG37_RS01635 rpmG 324490..324657 (+) 168 WP_001051798.1 50S ribosomal protein L33 -
  COG37_RS01640 mutM 324755..325564 (+) 810 WP_001114533.1 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase -
  COG37_RS01645 coaD 325603..326082 (-) 480 WP_001171873.1 pantetheine-phosphate adenylyltransferase -
  COG37_RS01650 waaA 326090..327367 (-) 1278 WP_000891562.1 lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase -
  COG37_RS01655 rfaQ 327780..328838 (+) 1059 WP_000360402.1 lipopolysaccharide core heptosyltransferase RfaQ -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 25258.35 Da        Isoelectric Point: 7.9748

>NTDB_id=212088 COG37_RS01625 WP_001297375.1 323348..324016(+) (radC) [Escherichia coli O25:H16 strain F5505-C1]
MKNNAQLLMPREKMLKFGISALTDVELLALFLRTGTRGKDVLTLAKEMLENFGSLYGLLTSEYEQFSGVHGIGVAKFAQL
KGIAELARRYYNVRMREESPLLSPEMTREFLQSQLTGEEREIFMVIFLDSQHRVITHSRLFSGTLNHVEVHPREIIREAI
KINASALILAHNHPSGCAEPSKADKLITERIIKSCQFMDLRVLDHIVIGRGEYVSFAERGWI

Nucleotide


Download         Length: 669 bp        

>NTDB_id=212088 COG37_RS01625 WP_001297375.1 323348..324016(+) (radC) [Escherichia coli O25:H16 strain F5505-C1]
GTGAAAAACAATGCACAGCTGTTGATGCCGCGCGAAAAAATGCTGAAGTTTGGTATTAGCGCCTTAACGGATGTCGAGCT
GCTGGCGTTATTTCTGCGTACCGGAACGCGCGGTAAAGATGTATTAACCCTGGCAAAAGAGATGCTGGAGAATTTCGGCT
CTCTTTATGGCTTGTTAACCTCTGAATATGAACAATTTAGTGGCGTTCATGGAATTGGCGTAGCGAAATTTGCCCAGTTA
AAGGGGATTGCTGAACTGGCGCGGCGTTACTACAACGTGCGGATGCGTGAAGAAAGCCCTTTACTCAGCCCGGAGATGAC
GCGGGAATTTTTACAAAGCCAGCTCACGGGTGAGGAGCGGGAGATCTTTATGGTGATCTTTCTCGACTCACAACACCGGG
TTATAACGCATAGCCGTCTTTTTTCCGGCACGCTAAACCATGTTGAAGTCCATCCTCGGGAAATTATCCGCGAAGCGATA
AAAATAAACGCCTCGGCGCTGATCCTTGCACATAATCACCCTTCGGGTTGTGCTGAACCCAGTAAAGCGGATAAACTCAT
TACTGAACGGATAATAAAGAGTTGTCAGTTCATGGATTTACGCGTGCTCGACCATATCGTGATTGGGCGTGGAGAGTATG
TTTCTTTTGCCGAACGCGGCTGGATTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(103-220)

UPF0758 N-terminal (UPF0758_N)

(9-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P65957

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

49.55

100

0.496