Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   BEI48_RS00585 Genome accession   NZ_CP018931
Coordinates   105343..106470 (-) Length   375 a.a.
NCBI ID   WP_000470753.1    Uniprot ID   Q6I535
Organism   Bacillus cereus strain ISSFR-3F     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 100343..111470
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BEI48_RS00575 gyrA 100822..103293 (-) 2472 WP_072180241.1 DNA gyrase subunit A -
  BEI48_RS00580 gyrB 103382..105304 (-) 1923 WP_000435993.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  BEI48_RS00585 recF 105343..106470 (-) 1128 WP_000470753.1 DNA replication/repair protein RecF Machinery gene
  BEI48_RS00590 yaaA 106483..106695 (-) 213 WP_000821367.1 S4 domain-containing protein YaaA -
  BEI48_RS00595 dnaN 106823..107962 (-) 1140 WP_001212527.1 DNA polymerase III subunit beta -
  BEI48_RS00600 dnaA 108141..109481 (-) 1341 WP_000428021.1 chromosomal replication initiator protein DnaA -
  BEI48_RS00605 rpmH 110047..110181 (+) 135 WP_000831901.1 50S ribosomal protein L34 -
  BEI48_RS00610 rnpA 110258..110617 (+) 360 WP_000726628.1 ribonuclease P protein component -
  BEI48_RS00615 spoIIIJ 110657..111424 (+) 768 WP_000727748.1 YidC family membrane integrase SpoIIIJ -

Sequence

Protein


Download         Length: 375 a.a.        Molecular weight: 43362.71 Da        Isoelectric Point: 6.9850

>NTDB_id=212077 BEI48_RS00585 WP_000470753.1 105343..106470(-) (recF) [Bacillus cereus strain ISSFR-3F]
MFISEIQLKNYRNYEKLELSFEDKVNVIIGENAQGKTNLMEAIYVLAMAKSHRTSNDRELIRWDEDFGQIKGKLQKRNSS
LSLELNISKKGKKAKLNQLEQQKLSQYIGVMNVVMFAPEDLNLVKGSPQVRRRFLDMELGQIAPVYLYELSQYQKVLTQR
NHLLKKMQGNSKNEETMLDVFTLQLIEHGTKILRKRFEFLHLLQEWAAPIHRGISRGLEELEIVYKPSVDVSESMDLSKI
KEVYYESFQSVKQREIFRGTTLIGPHRDDLQFFVNSKNVQVFGSQGQQRTTALSLKLAEIELIYSEVKEYPILLLDDVLS
ELDDYRQSHLLNTIQGKVQTFVTTTSVDGIEHETLKEAKTIHVTNGTVDCEIDRA

Nucleotide


Download         Length: 1128 bp        

>NTDB_id=212077 BEI48_RS00585 WP_000470753.1 105343..106470(-) (recF) [Bacillus cereus strain ISSFR-3F]
TTGTTTATTTCAGAAATACAATTAAAAAACTATCGCAATTATGAAAAATTAGAGCTTTCCTTTGAAGATAAAGTAAATGT
AATTATCGGCGAGAACGCGCAAGGGAAAACGAATTTGATGGAAGCTATTTATGTTTTGGCGATGGCGAAATCTCATAGAA
CCTCTAATGATCGTGAGCTTATCCGTTGGGATGAAGATTTCGGTCAAATTAAAGGAAAGTTACAAAAGAGAAATAGTTCT
TTGTCTTTGGAATTAAATATCTCGAAAAAAGGTAAAAAGGCAAAATTAAATCAACTTGAACAACAAAAATTGAGTCAATA
TATTGGCGTGATGAATGTTGTCATGTTTGCCCCAGAAGATTTAAATCTTGTAAAAGGAAGCCCTCAAGTAAGAAGACGCT
TTTTAGATATGGAATTAGGCCAAATAGCTCCGGTCTATTTGTATGAATTGAGTCAATATCAAAAGGTGCTCACACAACGA
AATCACTTGCTGAAAAAGATGCAAGGGAATAGTAAGAATGAGGAAACGATGTTGGATGTATTTACACTTCAACTTATTGA
GCATGGTACAAAAATATTGCGAAAACGCTTTGAGTTTTTGCATTTACTACAAGAATGGGCAGCTCCAATTCATCGTGGTA
TAAGCCGTGGATTAGAAGAATTAGAAATTGTCTATAAACCGAGTGTAGATGTATCAGAATCAATGGATTTGTCGAAAATA
AAAGAAGTATACTATGAAAGTTTTCAATCAGTGAAACAACGTGAAATTTTCCGTGGTACGACTTTAATTGGTCCTCATCG
TGATGATTTACAATTCTTCGTTAATAGTAAAAATGTTCAAGTCTTTGGTTCGCAAGGACAACAACGAACGACCGCACTGT
CCCTAAAATTAGCTGAAATTGAATTGATTTACTCAGAAGTTAAGGAATATCCGATTCTTTTACTCGATGATGTATTATCA
GAATTAGATGATTATCGTCAATCGCATCTGTTAAATACAATTCAAGGAAAAGTGCAAACATTTGTGACAACGACGAGTGT
CGACGGAATTGAACACGAAACATTAAAAGAAGCGAAAACAATTCATGTAACGAACGGCACGGTAGATTGTGAAATAGATA
GGGCGTAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-348)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q6I535

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

66.304

98.133

0.651

Multiple sequence alignment