Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   BEI48_RS00380 Genome accession   NZ_CP018931
Coordinates   68778..69062 (+) Length   94 a.a.
NCBI ID   WP_000843036.1    Uniprot ID   A0A9W5VII1
Organism   Bacillus cereus strain ISSFR-3F     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 63778..74062
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BEI48_RS00365 rnmV 64600..65157 (-) 558 WP_000692830.1 ribonuclease M5 -
  BEI48_RS00370 - 65372..66139 (-) 768 WP_075396287.1 TatD family hydrolase -
  BEI48_RS00375 metG 66305..68287 (-) 1983 WP_000134147.1 methionine--tRNA ligase -
  BEI48_RS00380 abrB 68778..69062 (+) 285 WP_000843036.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  BEI48_RS00385 rsmI 69083..69958 (-) 876 WP_000267808.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  BEI48_RS00390 - 69927..70217 (-) 291 WP_000414342.1 GIY-YIG nuclease family protein -
  BEI48_RS00395 - 70204..70944 (-) 741 WP_001055361.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  BEI48_RS00400 yabA 71065..71415 (-) 351 WP_000412056.1 DNA replication initiation control protein YabA -
  BEI48_RS00405 - 71430..72257 (-) 828 WP_000272429.1 PSP1 domain-containing protein -
  BEI48_RS00410 holB 72263..73246 (-) 984 WP_000169577.1 DNA polymerase III subunit delta' -
  BEI48_RS00415 tmk 73282..73908 (-) 627 WP_000677237.1 dTMP kinase -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10490.17 Da        Isoelectric Point: 4.7174

>NTDB_id=212075 BEI48_RS00380 WP_000843036.1 68778..69062(+) (abrB) [Bacillus cereus strain ISSFR-3F]
MKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDGNLSLAEGKIILSKEGAE
QILNELQDYIETAK

Nucleotide


Download         Length: 285 bp        

>NTDB_id=212075 BEI48_RS00380 WP_000843036.1 68778..69062(+) (abrB) [Bacillus cereus strain ISSFR-3F]
ATGAAATCTACTGGTATCGTTCGTAAAGTTGATGAATTAGGTCGTGTAGTAATTCCAATCGAATTACGCCGTACTTTAGG
TATTGCAGAAAAGGATGCACTTGAAATCTATGTTGATGACGAGAAAATCATCTTAAAAAAATATAAACCAAACATGACTT
GCCAAGTAACTGGTGAAGTATCTGATGGTAACCTATCTTTAGCTGAAGGTAAAATTATCTTAAGCAAAGAAGGCGCTGAG
CAAATCTTAAACGAACTTCAAGATTATATCGAAACAGCAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-89)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

85.106

100

0.851

Multiple sequence alignment