Detailed information NTG0212070

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: CS032_RS26145
• Genome accession: NZ_CP024256
• Coordinates: 4691944..4692936 (-)
• Length: 330 a.a.
• NCBI ID: WP_023278639.1
• Uniprot ID: -
• Organism: Escherichia coli strain ATCC 43886
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 4686944..4697936

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CS032_RS26120	-	4688147..4688278 (+)	132	Protein_4533	serine/threonine protein phosphatase	-
CS032_RS26125	-	4688334..4689031 (+)	698	WP_223419586.1	IS1 family transposase	-
CS032_RS26130	-	4689080..4689616 (+)	537	WP_050438173.1	aldolase	-
CS032_RS26135	ygbM	4689621..4690397 (+)	777	WP_001136934.1	HPr family phosphocarrier protein	-
CS032_RS26140	ygbN	4690486..4691850 (+)	1365	WP_001735624.1	GntP family transporter	-
CS032_RS26145	rpoS	4691944..4692936 (-)	993	WP_023278639.1	RNA polymerase sigma factor RpoS	Regulator
CS032_RS26150	nlpD	4692999..4694093 (-)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
CS032_RS26155	pcm	4694278..4694904 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
CS032_RS26160	surE	4694898..4695659 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
CS032_RS26165	truD	4695640..4696689 (-)	1050	WP_000568946.1	tRNA pseudouridine(13) synthase TruD	-
CS032_RS26170	ispF	4696686..4697165 (-)	480	WP_001735626.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
CS032_RS26175	ispD	4697165..4697875 (-)	711	WP_000246135.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37953.80 Da
• Isoelectric Point: 4.5593

>NTDB_id=212070 CS032_RS26145 WP_023278639.1 4691944..4692936(-) (rpoS) [Escherichia coli strain ATCC 43886]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFHFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=212070 CS032_RS26145 WP_023278639.1 4691944..4692936(-) (rpoS) [Escherichia coli strain ATCC 43886]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCACTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGTGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	72.755	97.879	0.712