Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   CS032_RS25880 Genome accession   NZ_CP024256
Coordinates   4642740..4643255 (-) Length   171 a.a.
NCBI ID   WP_001130211.1    Uniprot ID   A0ABR8T9Y4
Organism   Escherichia coli strain ATCC 43886     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 4637740..4648255
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CS032_RS25855 ygaZ 4638139..4638876 (+) 738 WP_032199439.1 L-valine exporter subunit YgaZ -
  CS032_RS25860 ygaH 4638866..4639201 (+) 336 WP_000119766.1 L-valine transporter subunit YgaH -
  CS032_RS25865 emrR 4639292..4639822 (+) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  CS032_RS25870 emrA 4639949..4641121 (+) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  CS032_RS25875 emrB 4641138..4642676 (+) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  CS032_RS25880 luxS 4642740..4643255 (-) 516 WP_001130211.1 S-ribosylhomocysteine lyase Regulator
  CS032_RS25885 gshA 4643405..4644961 (-) 1557 WP_000611804.1 glutamate--cysteine ligase -
  CS032_RS25890 yqaA 4645034..4645462 (-) 429 WP_001287454.1 YqaA family protein -
  CS032_RS25895 yqaB 4645459..4646025 (-) 567 WP_000273289.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  CS032_RS25925 csrA 4647349..4647534 (-) 186 WP_000906486.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19416.19 Da        Isoelectric Point: 5.0362

>NTDB_id=212067 CS032_RS25880 WP_001130211.1 4642740..4643255(-) (luxS) [Escherichia coli strain ATCC 43886]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=212067 CS032_RS25880 WP_001130211.1 4642740..4643255(-) (luxS) [Escherichia coli strain ATCC 43886]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTACGCATCAACAGCAACGAAGAACTGGCA
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731