Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   CS032_RS05565 Genome accession   NZ_CP024256
Coordinates   790958..791626 (-) Length   222 a.a.
NCBI ID   WP_001297375.1    Uniprot ID   P65957
Organism   Escherichia coli strain ATCC 43886     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 785958..796626
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CS032_RS05535 rfaQ 786136..787194 (-) 1059 WP_000360402.1 lipopolysaccharide core heptosyltransferase RfaQ -
  CS032_RS05540 waaA 787607..788884 (+) 1278 WP_000891562.1 lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase -
  CS032_RS05545 coaD 788892..789371 (+) 480 WP_001171873.1 pantetheine-phosphate adenylyltransferase -
  CS032_RS05550 mutM 789410..790219 (-) 810 WP_001114533.1 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase -
  CS032_RS05555 rpmG 790317..790484 (-) 168 WP_001051798.1 50S ribosomal protein L33 -
  CS032_RS05560 rpmB 790505..790741 (-) 237 WP_000091955.1 50S ribosomal protein L28 -
  CS032_RS05565 radC 790958..791626 (-) 669 WP_001297375.1 DNA repair protein RadC Machinery gene
  CS032_RS05570 coaBC 791798..793018 (+) 1221 WP_000050139.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  CS032_RS05575 dut 792996..793454 (+) 459 WP_000976070.1 dUTP diphosphatase -
  CS032_RS05580 slmA 793561..794157 (+) 597 WP_000818601.1 nucleoid occlusion factor SlmA -
  CS032_RS05585 pyrE 794194..794835 (-) 642 WP_000806177.1 orotate phosphoribosyltransferase -
  CS032_RS05590 rph 794901..795617 (-) 717 WP_001247089.1 ribonuclease PH -
  CS032_RS05600 yicC 795744..796607 (+) 864 WP_000621336.1 YicC/YloC family endoribonuclease -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 25258.35 Da        Isoelectric Point: 7.9748

>NTDB_id=212009 CS032_RS05565 WP_001297375.1 790958..791626(-) (radC) [Escherichia coli strain ATCC 43886]
MKNNAQLLMPREKMLKFGISALTDVELLALFLRTGTRGKDVLTLAKEMLENFGSLYGLLTSEYEQFSGVHGIGVAKFAQL
KGIAELARRYYNVRMREESPLLSPEMTREFLQSQLTGEEREIFMVIFLDSQHRVITHSRLFSGTLNHVEVHPREIIREAI
KINASALILAHNHPSGCAEPSKADKLITERIIKSCQFMDLRVLDHIVIGRGEYVSFAERGWI

Nucleotide


Download         Length: 669 bp        

>NTDB_id=212009 CS032_RS05565 WP_001297375.1 790958..791626(-) (radC) [Escherichia coli strain ATCC 43886]
GTGAAAAACAATGCACAGCTGTTGATGCCGCGCGAAAAAATGCTGAAGTTTGGTATTAGCGCCTTAACGGATGTCGAGCT
GCTGGCGTTATTTCTGCGTACCGGAACGCGCGGTAAAGATGTATTAACCCTGGCAAAAGAGATGCTGGAGAATTTCGGCT
CTCTTTATGGCTTGTTAACCTCTGAATATGAACAATTTAGTGGCGTTCATGGAATTGGCGTAGCGAAATTTGCCCAGTTA
AAGGGGATTGCTGAACTGGCGCGGCGTTACTACAACGTGCGGATGCGTGAAGAAAGCCCTTTACTCAGCCCGGAGATGAC
GCGGGAATTTTTACAAAGCCAGCTCACGGGTGAGGAGCGGGAGATCTTTATGGTGATCTTTCTCGACTCACAACACCGGG
TTATAACGCATAGCCGTCTTTTTTCCGGCACGCTAAACCATGTTGAAGTCCATCCTCGGGAAATTATCCGCGAAGCGATA
AAAATAAACGCCTCGGCGCTGATCCTTGCACATAATCACCCTTCGGGTTGTGCTGAACCCAGTAAAGCGGATAAACTCAT
TACTGAACGGATAATAAAGAGTTGTCAGTTCATGGATTTACGCGTGCTCGACCATATCGTGATTGGGCGTGGAGAGTATG
TTTCTTTTGCCGAACGCGGCTGGATTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(103-220)

UPF0758 N-terminal (UPF0758_N)

(9-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P65957

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

49.55

100

0.496