Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   COG34_RS17075 Genome accession   NZ_CP024243
Coordinates   3295985..3296500 (+) Length   171 a.a.
NCBI ID   WP_001130211.1    Uniprot ID   A0ABR8T9Y4
Organism   Escherichia coli O128:H27 strain 90-9281     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3290985..3301500
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  COG34_RS17030 csrA 3291437..3291622 (+) 186 WP_000906486.1 carbon storage regulator CsrA -
  COG34_RS17060 yqaB 3293215..3293781 (+) 567 WP_000273309.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  COG34_RS17065 yqaA 3293778..3294206 (+) 429 WP_001287457.1 YqaA family protein -
  COG34_RS17070 gshA 3294279..3295835 (+) 1557 WP_000611802.1 glutamate--cysteine ligase -
  COG34_RS17075 luxS 3295985..3296500 (+) 516 WP_001130211.1 S-ribosylhomocysteine lyase Regulator
  COG34_RS17080 emrB 3296564..3298102 (-) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  COG34_RS17085 emrA 3298119..3299291 (-) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  COG34_RS17090 emrR 3299418..3299948 (-) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  COG34_RS17095 ygaH 3300039..3300374 (-) 336 WP_000119763.1 L-valine transporter subunit YgaH -
  COG34_RS17100 ygaZ 3300364..3301101 (-) 738 WP_000445658.1 L-valine exporter subunit YgaZ -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19416.19 Da        Isoelectric Point: 5.0362

>NTDB_id=211891 COG34_RS17075 WP_001130211.1 3295985..3296500(+) (luxS) [Escherichia coli O128:H27 strain 90-9281]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=211891 COG34_RS17075 WP_001130211.1 3295985..3296500(+) (luxS) [Escherichia coli O128:H27 strain 90-9281]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTACGCATCAACAGCAACGAAGAACTGGCA
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731