Detailed information NTG0211888

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: COG34_RS16780
• Genome accession: NZ_CP024243
• Coordinates: 3239872..3240864 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli O128:H27 strain 90-9281
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3234872..3245864

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
COG34_RS16750	ispD	3234933..3235643 (+)	711	WP_000246136.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
COG34_RS16755	ispF	3235643..3236122 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
COG34_RS16760	truD	3236119..3237168 (+)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
COG34_RS16765	surE	3237149..3237910 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
COG34_RS16770	pcm	3237904..3238530 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
COG34_RS16775	nlpD	3238715..3239809 (+)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
COG34_RS16780	rpoS	3239872..3240864 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
COG34_RS16785	-	3240985..3241392 (-)	408	WP_001208070.1	MarR family transcriptional regulator	-
COG34_RS16790	-	3241539..3242132 (+)	594	WP_000767707.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
COG34_RS16795	-	3242132..3243559 (+)	1428	WP_000863223.1	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
COG34_RS16800	-	3243570..3243806 (+)	237	WP_000562984.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
COG34_RS16805	ygbN	3243845..3245209 (-)	1365	WP_000104439.1	GntP family transporter	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=211888 COG34_RS16780 WP_000081550.1 3239872..3240864(+) (rpoS) [Escherichia coli O128:H27 strain 90-9281]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=211888 COG34_RS16780 WP_000081550.1 3239872..3240864(+) (rpoS) [Escherichia coli O128:H27 strain 90-9281]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715