Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   COG34_RS08740 Genome accession   NZ_CP024243
Coordinates   1668464..1668940 (+) Length   158 a.a.
NCBI ID   WP_074503008.1    Uniprot ID   -
Organism   Escherichia coli O128:H27 strain 90-9281     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1663464..1673940
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  COG34_RS08705 - 1663996..1664928 (-) 933 WP_099588454.1 hypothetical protein -
  COG34_RS08710 - 1665035..1665919 (+) 885 WP_099588371.1 GTPase -
  COG34_RS08715 - 1666038..1666715 (+) 678 WP_074504021.1 hypothetical protein -
  COG34_RS08720 - 1666721..1666954 (+) 234 WP_099588372.1 DUF905 family protein -
  COG34_RS08730 - 1667053..1667871 (+) 819 WP_074503010.1 DUF932 domain-containing protein -
  COG34_RS08735 - 1667963..1668448 (+) 486 WP_000206660.1 antirestriction protein -
  COG34_RS08740 radC 1668464..1668940 (+) 477 WP_074503008.1 RadC family protein Machinery gene
  COG34_RS08745 - 1669009..1669230 (+) 222 WP_000692295.1 DUF987 domain-containing protein -
  COG34_RS08750 - 1669310..1669678 (+) 369 WP_024183700.1 type IV toxin-antitoxin system YeeU family antitoxin -
  COG34_RS08755 - 1669767..1670144 (+) 378 WP_074503007.1 TA system toxin CbtA family protein -
  COG34_RS08760 - 1670141..1670629 (+) 489 WP_000777667.1 DUF5983 family protein -
  COG34_RS08765 - 1670641..1670838 (+) 198 WP_000839291.1 DUF957 domain-containing protein -
  COG34_RS08770 - 1670923..1671687 (+) 765 Protein_1600 DUF4942 domain-containing protein -
  COG34_RS26920 - 1673012..1673125 (+) 114 Protein_1602 DUF4942 domain-containing protein -
  COG34_RS08785 - 1673197..1673460 (+) 264 WP_001143297.1 type II toxin-antitoxin system ParD family antitoxin -
  COG34_RS08790 - 1673457..1673783 (+) 327 WP_000779483.1 type II toxin-antitoxin system RelE/ParE family toxin -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17631.28 Da        Isoelectric Point: 7.6151

>NTDB_id=211847 COG34_RS08740 WP_074503008.1 1668464..1668940(+) (radC) [Escherichia coli O128:H27 strain 90-9281]
MQQLSFLPGAMTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVILAHNHPSGEVTPSKADRLITERLVQALALVDIRVPDHLIVGGSQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=211847 COG34_RS08740 WP_074503008.1 1668464..1668940(+) (radC) [Escherichia coli O128:H27 strain 90-9281]
ATGCAACAGCTTTCCTTTCTGCCCGGAGCGATGACGCCCGGCGAGCGCAGCCTCATTCAGCGGGCCCTGAAAACCCTAGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGAGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGGGAAGAGTTCCGGGTACTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTTCATCCCCGGGAAGTGATTAAACGTGCCCTGTACCACAATGCCGCCGCCGTGATACTGGCACA
CAACCACCCGTCCGGTGAAGTCACTCCCAGTAAGGCAGACCGGCTTATTACGGAACGTCTGGTTCAGGCGCTGGCCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAGCCAGGTATTCTCCTTTGCCGAACACGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

56.637

71.519

0.405