Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   COG33_RS15965 Genome accession   NZ_CP024240
Coordinates   3003150..3003818 (-) Length   222 a.a.
NCBI ID   WP_001298959.1    Uniprot ID   Q31UY8
Organism   Escherichia coli O114:H49 strain 90-9280     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2998150..3008818
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  COG33_RS15935 rfaQ 2998328..2999386 (-) 1059 WP_000360412.1 lipopolysaccharide core heptosyltransferase RfaQ -
  COG33_RS15940 waaA 2999799..3001076 (+) 1278 WP_000891564.1 lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase -
  COG33_RS15945 coaD 3001084..3001563 (+) 480 WP_001171866.1 pantetheine-phosphate adenylyltransferase -
  COG33_RS15950 mutM 3001602..3002411 (-) 810 WP_001114533.1 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase -
  COG33_RS15955 rpmG 3002509..3002676 (-) 168 WP_001051798.1 50S ribosomal protein L33 -
  COG33_RS15960 rpmB 3002697..3002933 (-) 237 WP_000091955.1 50S ribosomal protein L28 -
  COG33_RS15965 radC 3003150..3003818 (-) 669 WP_001298959.1 DNA repair protein RadC Machinery gene
  COG33_RS15970 coaBC 3003990..3005210 (+) 1221 WP_000050155.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  COG33_RS15975 dut 3005188..3005646 (+) 459 WP_000976070.1 dUTP diphosphatase -
  COG33_RS15980 slmA 3005753..3006349 (+) 597 WP_000818601.1 nucleoid occlusion factor SlmA -
  COG33_RS15985 pyrE 3006386..3007027 (-) 642 WP_000806161.1 orotate phosphoribosyltransferase -
  COG33_RS15990 rph 3007093..3007809 (-) 717 WP_001247093.1 ribonuclease PH -
  COG33_RS16000 yicC 3007936..3008799 (+) 864 WP_000621336.1 YicC/YloC family endoribonuclease -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 25274.35 Da        Isoelectric Point: 7.9748

>NTDB_id=211795 COG33_RS15965 WP_001298959.1 3003150..3003818(-) (radC) [Escherichia coli O114:H49 strain 90-9280]
MKNNSQLLMPREKMLKFGISALTDVELLALFLRTGTRGKDVLTLAKEMLENFGSLYGLLTSEYEQFSGVHGIGVAKFAQL
KGIAELARRYYNVRMREESPLLSPEMTREFLQSQLTGEEREIFMVIFLDSQHRVITHSRLFSGTLNHVEVHPREIIREAI
KINASALILAHNHPSGCAEPSKADKLITERIIKSCQFMDLRVLDHIVIGRGEYVSFAERGWI

Nucleotide


Download         Length: 669 bp        

>NTDB_id=211795 COG33_RS15965 WP_001298959.1 3003150..3003818(-) (radC) [Escherichia coli O114:H49 strain 90-9280]
GTGAAAAACAATTCACAGCTGTTGATGCCGCGCGAAAAAATGCTGAAGTTTGGTATTAGCGCCTTAACGGATGTCGAGCT
GCTGGCGCTATTTCTGCGTACCGGAACGCGCGGTAAAGATGTATTAACCCTGGCAAAAGAGATGCTGGAGAATTTCGGCT
CTCTTTATGGCTTGTTAACCTCTGAATATGAACAATTTAGTGGCGTTCATGGAATTGGCGTGGCGAAATTTGCCCAGTTA
AAGGGGATTGCTGAACTGGCGCGGCGTTACTACAACGTGCGGATGCGTGAAGAAAGCCCTTTACTCAGCCCGGAGATGAC
GAGGGAATTTTTACAAAGCCAGCTCACGGGTGAGGAGCGGGAGATCTTTATGGTGATCTTTCTCGACTCCCAACACCGGG
TTATAACGCATAGCCGTCTTTTTTCCGGCACGCTAAACCATGTTGAAGTCCATCCTCGGGAAATTATCCGCGAAGCGATA
AAAATAAACGCCTCGGCGCTGATCCTTGCACATAATCACCCTTCGGGTTGTGCTGAACCCAGTAAAGCGGATAAACTCAT
TACTGAACGGATAATAAAGAGTTGTCAGTTCATGGATTTACGCGTGCTCGACCATATCGTGATTGGGCGTGGAGAGTATG
TTTCTTTTGCCGAACGCGGCTGGATTTAA

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(9-77)

RadC-like JAB domain (RadC)

(103-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q31UY8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

49.55

100

0.496