Detailed information    

insolico Bioinformatically predicted

Overview

Name   tonB2   Type   Machinery gene
Locus tag   BVD86_RS17360 Genome accession   NZ_CP018909
Coordinates   3591329..3592213 (+) Length   294 a.a.
NCBI ID   WP_101664484.1    Uniprot ID   -
Organism   Acinetobacter pittii strain XJ88     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3586329..3597213
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BVD86_RS17335 (BVD86_17355) - 3586642..3587889 (-) 1248 WP_101664482.1 YihY family inner membrane protein -
  BVD86_RS17340 (BVD86_17360) wrbA 3588251..3588853 (+) 603 WP_213064581.1 NAD(P)H:quinone oxidoreductase -
  BVD86_RS17345 (BVD86_17365) xpt 3588905..3589480 (-) 576 WP_002119547.1 xanthine phosphoribosyltransferase -
  BVD86_RS17350 (BVD86_17370) - 3589553..3590266 (-) 714 WP_060464928.1 DUF3108 domain-containing protein -
  BVD86_RS17355 (BVD86_17375) - 3590425..3591096 (-) 672 WP_017386970.1 hypothetical protein -
  BVD86_RS17360 (BVD86_17380) tonB2 3591329..3592213 (+) 885 WP_101664484.1 energy transducer TonB Machinery gene
  BVD86_RS17365 (BVD86_17385) ybeY 3592266..3592742 (-) 477 WP_017386968.1 rRNA maturation RNase YbeY -
  BVD86_RS17370 (BVD86_17390) phoL 3592752..3593840 (-) 1089 WP_002119513.1 PhoH family protein -
  BVD86_RS17375 (BVD86_17395) miaB 3593878..3595329 (-) 1452 WP_002119558.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -

Sequence

Protein


Download         Length: 294 a.a.        Molecular weight: 33626.16 Da        Isoelectric Point: 7.6438

>NTDB_id=211783 BVD86_RS17360 WP_101664484.1 3591329..3592213(+) (tonB2) [Acinetobacter pittii strain XJ88]
MLNKRSLSIEPFHHWWQDRVFIAATILAILLHIFVLLIHFAMPSPSEQSTKEIAISIRPSNEPVHQADFLAQADQQGSGA
FREAHRTSSDTPNPMPNDASTGNAELESLQKIQQQRELKFEEKVLMTVLSWQKQADASQRKKELEQLQSQFQAKAAMVAS
LEAQYLQRQQDFSRQQKIKTIDGIQAKKDASAIYLDKFREKVELYGNRYYPEEAKQQQLRGEVRLMVILNAQGGIRAIRL
LESSGHSILDEAAKSSVRRGAPFGHFDANMKDISELRIVRTWRFDPAEAEFEVH

Nucleotide


Download         Length: 885 bp        

>NTDB_id=211783 BVD86_RS17360 WP_101664484.1 3591329..3592213(+) (tonB2) [Acinetobacter pittii strain XJ88]
ATGTTGAACAAAAGAAGTTTATCCATAGAGCCTTTTCATCATTGGTGGCAAGACCGAGTCTTTATTGCTGCAACAATATT
GGCAATCTTACTGCATATTTTTGTGTTGCTCATTCACTTTGCCATGCCTAGCCCATCAGAGCAATCTACTAAAGAAATTG
CAATTTCAATTCGGCCAAGCAATGAACCAGTTCACCAAGCAGATTTTTTAGCGCAAGCAGATCAGCAAGGCTCGGGCGCA
TTTCGTGAAGCTCATCGGACTTCTAGTGATACTCCAAATCCGATGCCTAATGATGCTTCAACTGGAAATGCAGAGTTAGA
AAGTTTGCAAAAGATTCAGCAGCAAAGAGAGCTTAAATTTGAAGAAAAAGTTTTAATGACGGTTTTGAGTTGGCAGAAAC
AAGCGGATGCAAGTCAAAGAAAAAAAGAATTAGAACAACTACAAAGTCAATTTCAAGCAAAAGCTGCGATGGTTGCAAGC
CTTGAAGCACAATATTTGCAACGCCAACAAGATTTCAGCCGTCAGCAAAAAATCAAAACAATCGATGGAATTCAAGCGAA
GAAAGATGCTTCAGCTATTTATTTAGATAAATTTCGTGAAAAAGTAGAGCTTTATGGCAACCGCTATTACCCTGAAGAAG
CCAAACAGCAACAGCTAAGAGGTGAAGTGCGTTTAATGGTTATTTTGAATGCTCAAGGCGGAATTCGTGCAATCCGACTG
CTTGAAAGCTCAGGGCATTCAATACTAGATGAAGCAGCTAAGTCTTCAGTACGTCGCGGCGCACCATTCGGGCATTTTGA
TGCGAATATGAAAGATATTTCAGAGTTGCGTATTGTACGTACTTGGCGTTTTGATCCAGCGGAAGCTGAATTTGAGGTTC
ACTAA

Domains

Predicted by InterproScan.

Gram-negative bacterial TonB protein C-terminal (TonB_C)

(207-284)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tonB2 Acinetobacter baumannii D1279779

88.776

100

0.888

Multiple sequence alignment