Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   COG33_RS12090 Genome accession   NZ_CP024240
Coordinates   2270708..2271184 (+) Length   158 a.a.
NCBI ID   WP_001186710.1    Uniprot ID   -
Organism   Escherichia coli O114:H49 strain 90-9280     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2265708..2276184
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  COG33_RS12060 - 2265858..2268374 (+) 2517 WP_001390659.1 hypothetical protein -
  COG33_RS12065 - 2268450..2268905 (+) 456 WP_000581504.1 IrmA family protein -
  COG33_RS12070 - 2268984..2269217 (+) 234 WP_001119729.1 DUF905 family protein -
  COG33_RS12080 - 2269317..2270135 (+) 819 WP_001234631.1 DUF932 domain-containing protein -
  COG33_RS12085 - 2270217..2270696 (+) 480 WP_000860064.1 antirestriction protein -
  COG33_RS12090 radC 2270708..2271184 (+) 477 WP_001186710.1 RadC family protein Machinery gene
  COG33_RS12095 yeeT 2271247..2271468 (+) 222 WP_000692303.1 DUF987 domain-containing protein -
  COG33_RS12100 cbeA 2271631..2271999 (+) 369 WP_001278232.1 type IV toxin-antitoxin system cytoskeleton bundling-enhancing antitoxin CbeA -
  COG33_RS12105 - 2272089..2272463 (+) 375 WP_000854753.1 TA system toxin CbtA family protein -
  COG33_RS12110 - 2272460..2272948 (+) 489 WP_000777541.1 DUF5983 family protein -
  COG33_RS12115 - 2272960..2273157 (+) 198 WP_000839281.1 DUF957 domain-containing protein -
  COG33_RS12120 - 2273254..2273823 (+) 570 WP_001290243.1 DUF4942 domain-containing protein -
  COG33_RS12125 yghD 2274104..2274640 (-) 537 WP_000942795.1 GspM family type II secretion system protein YghD -
  COG33_RS12130 gspL 2274642..2275820 (-) 1179 WP_000094974.1 type II secretion system protein GspL -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17630.26 Da        Isoelectric Point: 7.6151

>NTDB_id=211781 COG33_RS12090 WP_001186710.1 2270708..2271184(+) (radC) [Escherichia coli O114:H49 strain 90-9280]
MQQLSFLPGAMTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGNQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=211781 COG33_RS12090 WP_001186710.1 2270708..2271184(+) (radC) [Escherichia coli O114:H49 strain 90-9280]
ATGCAACAGCTTTCCTTTCTGCCCGGAGCGATGACGCCCGGCGAGCGCAGCCTTATTCAGCGGGCCCTGAAAACCCTGGA
CCGTCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAATTCCGGGTACTGTATCTGAATAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTGCTGGCGCA
CAATCACCCGTCCGGTGAAGTCACACCCAGTAAGGCAGACCGGCTTATCACCGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAACCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

54.867

71.519

0.392

Multiple sequence alignment