Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   BVD86_RS17015 Genome accession   NZ_CP018909
Coordinates   3535454..3536083 (-) Length   209 a.a.
NCBI ID   WP_101664466.1    Uniprot ID   -
Organism   Acinetobacter pittii strain XJ88     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3530454..3541083
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BVD86_RS16980 (BVD86_17010) mlaE 3530787..3531563 (+) 777 WP_002117010.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -
  BVD86_RS16985 (BVD86_17015) - 3531563..3532243 (+) 681 WP_005067241.1 outer membrane lipid asymmetry maintenance protein MlaD -
  BVD86_RS16990 (BVD86_17020) - 3532270..3532911 (+) 642 WP_002116826.1 MlaC/ttg2D family ABC transporter substrate-binding protein -
  BVD86_RS16995 (BVD86_17025) - 3532923..3533210 (+) 288 WP_005067244.1 STAS domain-containing protein -
  BVD86_RS17000 (BVD86_17030) - 3533283..3534296 (-) 1014 WP_002116978.1 magnesium and cobalt transport protein CorA -
  BVD86_RS17005 (BVD86_17035) - 3534455..3535036 (+) 582 WP_101664464.1 TIGR00730 family Rossman fold protein -
  BVD86_RS17010 (BVD86_17040) mutT 3535051..3535452 (+) 402 WP_101664465.1 NUDIX hydrolase -
  BVD86_RS17015 (BVD86_17045) comF 3535454..3536083 (-) 630 WP_101664466.1 ComF family protein Machinery gene
  BVD86_RS17020 (BVD86_17050) recG 3536076..3538121 (-) 2046 WP_101664467.1 ATP-dependent DNA helicase RecG -
  BVD86_RS17025 (BVD86_17055) - 3538142..3538957 (+) 816 WP_101664468.1 NAD-dependent epimerase/dehydratase family protein -
  BVD86_RS17030 (BVD86_17060) - 3539037..3540020 (+) 984 WP_101665001.1 putative solute-binding protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24547.69 Da        Isoelectric Point: 9.9486

>NTDB_id=211781 BVD86_RS17015 WP_101664466.1 3535454..3536083(-) (comF) [Acinetobacter pittii strain XJ88]
MFNFLNFKHLIQLFSPCSLCELDTREKYSLCKDCWEQLPWLKQTIQRNNQSVLVACNYAYPVNRIIQQFKYEQKLHYQIL
LGEILKQLKFPKVQAIVPMPISNQRLIERGFNQSLLLANILSRHLKIPVWQPIQRLNEHSQKGLTRLERFENIEQQFLPH
HQEKRRYRRVLIIDDVITTGSSVHALSQALKQLGCTSIHTACLAATPKS

Nucleotide


Download         Length: 630 bp        

>NTDB_id=211781 BVD86_RS17015 WP_101664466.1 3535454..3536083(-) (comF) [Acinetobacter pittii strain XJ88]
ATGTTTAATTTTTTAAATTTCAAGCATCTTATTCAGTTATTTTCACCTTGCTCATTGTGCGAGTTAGACACGCGAGAAAA
ATACTCACTCTGTAAAGACTGTTGGGAACAGCTACCTTGGCTTAAACAAACGATTCAACGTAATAATCAATCTGTTCTTG
TGGCCTGTAATTATGCTTATCCAGTTAACCGGATTATTCAGCAGTTTAAATATGAACAAAAGTTACATTATCAAATCTTA
TTAGGTGAAATTTTAAAACAATTAAAATTTCCCAAGGTACAAGCTATTGTACCCATGCCTATTTCCAATCAGCGTTTAAT
CGAGCGTGGTTTCAATCAATCATTACTACTTGCCAATATCTTAAGCAGACACTTAAAAATACCTGTTTGGCAACCAATCC
AACGTTTAAACGAGCACTCTCAAAAAGGACTTACTCGGCTAGAACGCTTTGAAAATATAGAACAACAATTTTTACCTCAT
CATCAAGAGAAACGACGTTATCGCCGCGTTCTCATTATTGATGACGTGATAACCACAGGAAGCTCTGTTCATGCGCTCAG
TCAAGCCCTTAAACAATTAGGCTGCACATCCATTCATACGGCGTGCCTAGCAGCAACACCGAAGAGTTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(114-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

83.254

100

0.833
  comF Acinetobacter baumannii D1279779

82.297

100

0.823

Multiple sequence alignment