Detailed information NTG0211727

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: CNZ63_RS16545
• Genome accession: NZ_CP024232
• Coordinates: 3190526..3191518 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli O6:H16 strain 2014EL-1346-6
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3185526..3196518

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CNZ63_RS16515	ispD	3185587..3186297 (+)	711	WP_000246135.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
CNZ63_RS16520	ispF	3186297..3186776 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
CNZ63_RS16525	truD	3186773..3187822 (+)	1050	WP_000568946.1	tRNA pseudouridine(13) synthase TruD	-
CNZ63_RS16530	surE	3187803..3188564 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
CNZ63_RS16535	pcm	3188558..3189184 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
CNZ63_RS16540	nlpD	3189369..3190463 (+)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
CNZ63_RS16545	rpoS	3190526..3191518 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
CNZ63_RS16550	ygbN	3191612..3192974 (-)	1363	Protein_3019	GntP family transporter	-
CNZ63_RS16555	ygbM	3193063..3193839 (-)	777	WP_001136934.1	HPr family phosphocarrier protein	-
CNZ63_RS16560	ygbL	3193844..3194482 (-)	639	WP_001278994.1	aldolase	-
CNZ63_RS16565	otnK	3194479..3195741 (-)	1263	WP_000590403.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=211727 CNZ63_RS16545 WP_000081550.1 3190526..3191518(+) (rpoS) [Escherichia coli O6:H16 strain 2014EL-1346-6]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=211727 CNZ63_RS16545 WP_000081550.1 3190526..3191518(+) (rpoS) [Escherichia coli O6:H16 strain 2014EL-1346-6]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGTGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715