Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   CNZ63_RS11590 Genome accession   NZ_CP024232
Coordinates   2228514..2229182 (+) Length   222 a.a.
NCBI ID   WP_001297375.1    Uniprot ID   P65957
Organism   Escherichia coli O6:H16 strain 2014EL-1346-6     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2223514..2234182
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CNZ63_RS11555 yicC 2223533..2224396 (-) 864 WP_000621336.1 YicC/YloC family endoribonuclease -
  CNZ63_RS11565 rph 2224523..2225239 (+) 717 WP_001247089.1 ribonuclease PH -
  CNZ63_RS11570 pyrE 2225305..2225946 (+) 642 WP_000806177.1 orotate phosphoribosyltransferase -
  CNZ63_RS11575 slmA 2225983..2226579 (-) 597 WP_000818601.1 nucleoid occlusion factor SlmA -
  CNZ63_RS11580 dut 2226686..2227144 (-) 459 WP_000976070.1 dUTP diphosphatase -
  CNZ63_RS11585 coaBC 2227122..2228342 (-) 1221 WP_000050139.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  CNZ63_RS11590 radC 2228514..2229182 (+) 669 WP_001297375.1 DNA repair protein RadC Machinery gene
  CNZ63_RS11595 rpmB 2229399..2229635 (+) 237 WP_000091955.1 50S ribosomal protein L28 -
  CNZ63_RS11600 rpmG 2229656..2229823 (+) 168 WP_001051798.1 50S ribosomal protein L33 -
  CNZ63_RS11605 mutM 2229921..2230730 (+) 810 WP_001114533.1 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase -
  CNZ63_RS11610 coaD 2230769..2231248 (-) 480 WP_001171873.1 pantetheine-phosphate adenylyltransferase -
  CNZ63_RS11615 waaA 2231256..2232533 (-) 1278 WP_000891562.1 lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase -
  CNZ63_RS11620 rfaQ 2232946..2234004 (+) 1059 WP_000360402.1 lipopolysaccharide core heptosyltransferase RfaQ -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 25258.35 Da        Isoelectric Point: 7.9748

>NTDB_id=211708 CNZ63_RS11590 WP_001297375.1 2228514..2229182(+) (radC) [Escherichia coli O6:H16 strain 2014EL-1346-6]
MKNNAQLLMPREKMLKFGISALTDVELLALFLRTGTRGKDVLTLAKEMLENFGSLYGLLTSEYEQFSGVHGIGVAKFAQL
KGIAELARRYYNVRMREESPLLSPEMTREFLQSQLTGEEREIFMVIFLDSQHRVITHSRLFSGTLNHVEVHPREIIREAI
KINASALILAHNHPSGCAEPSKADKLITERIIKSCQFMDLRVLDHIVIGRGEYVSFAERGWI

Nucleotide


Download         Length: 669 bp        

>NTDB_id=211708 CNZ63_RS11590 WP_001297375.1 2228514..2229182(+) (radC) [Escherichia coli O6:H16 strain 2014EL-1346-6]
GTGAAAAACAATGCACAGCTGTTGATGCCGCGCGAAAAAATGCTGAAGTTTGGTATTAGCGCCTTAACGGATGTCGAGCT
GCTGGCGTTATTTCTGCGTACCGGAACGCGCGGTAAAGATGTATTAACCCTGGCAAAAGAGATGCTGGAGAATTTCGGCT
CTCTTTATGGCTTGTTAACCTCTGAATATGAACAATTTAGTGGCGTTCATGGAATTGGCGTAGCGAAATTTGCCCAGTTA
AAGGGGATTGCTGAACTGGCGCGGCGTTACTACAACGTGCGGATGCGTGAAGAAAGCCCTTTACTCAGCCCGGAGATGAC
GCGGGAATTTTTACAAAGCCAGCTCACGGGTGAGGAGCGGGAGATCTTTATGGTGATCTTTCTCGACTCACAACACCGGG
TTATAACGCATAGCCGTCTTTTTTCCGGCACGCTAAACCATGTTGAAGTCCATCCTCGGGAAATTATCCGCGAAGCGATA
AAAATAAACGCCTCGGCGCTGATCCTTGCACATAATCACCCTTCGGGTTGTGCTGAACCCAGTAAAGCGGATAAACTCAT
TACTGAACGGATAATAAAGAGTTGTCAGTTCATGGATTTACGCGTGCTCGACCATATCGTGATTGGGCGTGGAGAGTATG
TTTCTTTTGCCGAACGCGGCTGGATTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(103-220)

UPF0758 N-terminal (UPF0758_N)

(9-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P65957

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

49.55

100

0.496

Multiple sequence alignment