Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   CNZ63_RS11160 Genome accession   NZ_CP024232
Coordinates   2149262..2149738 (-) Length   158 a.a.
NCBI ID   WP_001186774.1    Uniprot ID   -
Organism   Escherichia coli O6:H16 strain 2014EL-1346-6     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2144262..2154738
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CNZ63_RS29430 rhuM 2145403..2145564 (-) 162 Protein_2014 RhuM family protein -
  CNZ63_RS11125 - 2145801..2146639 (-) 839 Protein_2015 DUF4942 domain-containing protein -
  CNZ63_RS11130 - 2146736..2146933 (-) 198 WP_000839275.1 DUF957 domain-containing protein -
  CNZ63_RS11135 - 2146945..2147433 (-) 489 WP_000761693.1 DUF5983 family protein -
  CNZ63_RS11140 - 2147430..2147807 (-) 378 WP_000854743.1 TA system toxin CbtA family protein -
  CNZ63_RS11145 - 2147897..2148265 (-) 369 WP_001285298.1 type IV toxin-antitoxin system YeeU family antitoxin -
  CNZ63_RS11150 - 2148315..2148959 (-) 645 WP_000086754.1 hypothetical protein -
  CNZ63_RS11155 - 2148978..2149199 (-) 222 WP_000692307.1 DUF987 domain-containing protein -
  CNZ63_RS11160 radC 2149262..2149738 (-) 477 WP_001186774.1 RadC family protein Machinery gene
  CNZ63_RS11165 - 2149753..2150238 (-) 486 WP_000206659.1 antirestriction protein -
  CNZ63_RS11170 - 2150330..2151151 (-) 822 WP_001706654.1 DUF932 domain-containing protein -
  CNZ63_RS11190 - 2151477..2154323 (-) 2847 WP_000820580.1 Ag43/Cah family autotransporter adhesin -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17661.27 Da        Isoelectric Point: 7.2020

>NTDB_id=211706 CNZ63_RS11160 WP_001186774.1 2149262..2149738(-) (radC) [Escherichia coli O6:H16 strain 2014EL-1346-6]
MQQLSFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGSQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=211706 CNZ63_RS11160 WP_001186774.1 2149262..2149738(-) (radC) [Escherichia coli O6:H16 strain 2014EL-1346-6]
ATGCAACAGCTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAGCGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAGTTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTACTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCCAGTAAGGCAGACCGGCTTATCACCGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAGCCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

55.752

71.519

0.399