Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   A3411_RS22015 Genome accession   NZ_CP024228
Coordinates   4205104..4205619 (+) Length   171 a.a.
NCBI ID   WP_001130211.1    Uniprot ID   A0ABR8T9Y4
Organism   Escherichia coli O25:NM strain 2014EL-1343-2     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 4200104..4210619
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A3411_RS21970 csrA 4200825..4201010 (+) 186 WP_000906486.1 carbon storage regulator CsrA -
  A3411_RS22000 yqaB 4202334..4202900 (+) 567 WP_000273289.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  A3411_RS22005 yqaA 4202897..4203325 (+) 429 WP_001287454.1 YqaA family protein -
  A3411_RS22010 gshA 4203398..4204954 (+) 1557 WP_000611804.1 glutamate--cysteine ligase -
  A3411_RS22015 luxS 4205104..4205619 (+) 516 WP_001130211.1 S-ribosylhomocysteine lyase Regulator
  A3411_RS22020 emrB 4205683..4207221 (-) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  A3411_RS22025 emrA 4207238..4208410 (-) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  A3411_RS22030 emrR 4208537..4209067 (-) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  A3411_RS22035 ygaH 4209158..4209493 (-) 336 WP_000119766.1 L-valine transporter subunit YgaH -
  A3411_RS22040 ygaZ 4209483..4210220 (-) 738 WP_000445658.1 L-valine exporter subunit YgaZ -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19416.19 Da        Isoelectric Point: 5.0362

>NTDB_id=211660 A3411_RS22015 WP_001130211.1 4205104..4205619(+) (luxS) [Escherichia coli O25:NM strain 2014EL-1343-2]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=211660 A3411_RS22015 WP_001130211.1 4205104..4205619(+) (luxS) [Escherichia coli O25:NM strain 2014EL-1343-2]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTACGCATCAACAGCAACGAAGAACTGGCA
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731

Multiple sequence alignment