Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   PL11_RS00895 Genome accession   NZ_CP018906
Coordinates   161001..162812 (-) Length   603 a.a.
NCBI ID   WP_035168605.1    Uniprot ID   -
Organism   Lentilactobacillus curieae strain CCTCC M 2011381     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 156001..167812
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PL11_RS00870 (PL11_000865) - 156998..157510 (-) 513 WP_035168592.1 tRNA (cytidine(34)-2'-O)-methyltransferase -
  PL11_RS00875 (PL11_000870) - 157689..158591 (-) 903 WP_035168594.1 RluA family pseudouridine synthase -
  PL11_RS00880 (PL11_000875) - 158584..159396 (-) 813 WP_035168596.1 NAD kinase -
  PL11_RS00885 (PL11_000880) - 159374..160027 (-) 654 WP_035168598.1 GTP pyrophosphokinase -
  PL11_RS00890 (PL11_000885) - 160231..160854 (+) 624 WP_035168602.1 DsbA family protein -
  PL11_RS00895 (PL11_000890) pepF 161001..162812 (-) 1812 WP_035168605.1 oligoendopeptidase F Regulator
  PL11_RS00900 (PL11_000895) - 162860..163963 (-) 1104 WP_035168607.1 competence protein CoiA -
  PL11_RS00905 (PL11_000900) - 164048..165541 (+) 1494 WP_035168609.1 hypothetical protein -
  PL11_RS00910 (PL11_000905) - 165586..166251 (-) 666 WP_035168611.1 adaptor protein MecA -
  PL11_RS00915 (PL11_000910) spx 166367..166765 (-) 399 WP_035168613.1 transcriptional regulator Spx -
  PL11_RS00920 (PL11_000915) - 166877..167617 (-) 741 WP_035168615.1 MBL fold metallo-hydrolase -

Sequence

Protein


Download         Length: 603 a.a.        Molecular weight: 69202.21 Da        Isoelectric Point: 4.6017

>NTDB_id=211622 PL11_RS00895 WP_035168605.1 161001..162812(-) (pepF) [Lentilactobacillus curieae strain CCTCC M 2011381]
MAEVKELPLRKDVDPQLTWDLTTIYKDDSEFESDFKSMQDRIAGYSKLVGTLKNGAAQLLEATTEILSGARLLYKLYVYA
QLKNDQDTSVDKYQAMYSRASDLSSQFSGAIAWFDPELLGLDEATMTKYYSDEPKLKDYQRFYDQTFARRDHILSDDVEN
VLALAGDVFSSGEKTFGVLNNTDLKFPVVTDEDGNQVQLSEGVYGVLLESADQSVREQAFKKLYEIYGQFQHTLSATLTT
NVKNHNLKAKLRHYDNALEAALSDNEIPTTVYQNLIDVVNEHLPLLHRYVALRKKILGLDELHMYDMYTSLVGEKSPRYT
FEESKKIARDALQVLGDDYVSHVDEEFNNRWIDVVENRYKRSGGYSSGTYDTNPFILLNWKDNLDNLYTLIHETGHSMHS
YYSKTNQPFQYGDYSIFVAEIASTTNENILTNKLLGNDDLDPELKKHILNYYLDGFKGTVFRQTQFAEFEQFIHEQDAAG
KPLTSAFLNDYYRKLNEKYYGDAVISDEEIGLEWSRIPHFYYDFYVYQYSTGFAAASTLANKVVNGDKGDVDAYLSFLKA
GSSDIPTNVMKRAGVDMTKPDYLETAFKIFEERLNEFEKLVEK

Nucleotide


Download         Length: 1812 bp        

>NTDB_id=211622 PL11_RS00895 WP_035168605.1 161001..162812(-) (pepF) [Lentilactobacillus curieae strain CCTCC M 2011381]
ATGGCTGAAGTAAAAGAATTACCACTTAGAAAAGATGTTGACCCCCAATTAACTTGGGACCTCACGACGATTTATAAAGA
TGATTCAGAATTTGAGAGTGATTTTAAATCGATGCAGGACCGAATTGCTGGGTATTCTAAATTGGTTGGTACATTAAAAA
ATGGTGCTGCCCAACTTTTAGAAGCAACTACTGAGATTTTATCGGGTGCCCGACTACTGTATAAGCTGTACGTTTATGCC
CAGTTGAAAAATGATCAAGATACCAGCGTGGATAAGTATCAAGCAATGTATTCTCGGGCTTCTGACCTGTCTTCTCAATT
TTCTGGAGCGATTGCTTGGTTCGATCCTGAACTTCTTGGCTTGGATGAAGCGACGATGACAAAGTATTACTCAGATGAGC
CTAAACTTAAAGACTATCAACGGTTTTATGACCAAACTTTTGCACGCCGTGACCACATTTTAAGTGATGACGTAGAAAAC
GTCTTAGCACTTGCCGGTGATGTATTTAGTTCTGGTGAAAAGACGTTTGGCGTATTAAATAACACTGATTTAAAATTCCC
AGTGGTAACTGACGAAGATGGCAATCAGGTCCAGTTATCTGAAGGAGTATATGGGGTTTTGCTTGAATCTGCGGATCAGT
CAGTTCGTGAACAAGCATTTAAAAAGCTCTACGAAATTTATGGCCAATTTCAACACACTTTAAGTGCAACATTGACCACT
AACGTTAAGAATCATAATTTGAAAGCCAAGCTTAGACATTATGATAATGCTTTGGAAGCGGCATTGTCCGATAATGAAAT
TCCAACAACGGTTTACCAAAATTTGATTGATGTGGTAAATGAACATTTGCCACTACTTCACAGATACGTTGCCCTAAGAA
AAAAGATTTTGGGGCTAGACGAGTTGCATATGTACGATATGTATACATCGTTAGTTGGCGAAAAATCACCACGGTATACC
TTTGAGGAATCAAAGAAAATTGCTCGCGATGCATTACAGGTTTTAGGTGACGATTATGTAAGTCACGTTGATGAGGAATT
TAATAACCGTTGGATCGATGTGGTTGAAAATCGTTATAAGCGAAGTGGTGGATATTCATCAGGAACATACGACACCAACC
CATTTATTCTGTTGAATTGGAAGGATAATCTGGATAACCTGTACACGTTGATACATGAAACTGGTCACAGTATGCATAGT
TACTACTCCAAGACTAACCAGCCGTTCCAATACGGAGATTACTCGATTTTCGTTGCAGAAATCGCTTCTACCACCAACGA
AAATATTTTAACGAATAAATTGCTAGGAAATGATGATCTTGATCCAGAATTAAAGAAGCATATCCTGAACTACTATCTTG
ATGGATTCAAAGGAACTGTTTTCCGTCAGACTCAATTTGCTGAATTTGAACAGTTTATCCATGAGCAAGATGCTGCTGGG
AAACCATTGACCTCTGCATTTCTTAACGACTATTACCGGAAATTGAACGAAAAGTATTATGGGGATGCTGTGATTTCTGA
TGAAGAAATTGGCCTTGAATGGTCACGAATTCCACACTTTTACTACGACTTTTATGTTTACCAGTACTCAACTGGATTTG
CAGCAGCTTCTACCCTTGCCAATAAGGTAGTTAATGGGGACAAAGGTGATGTTGATGCGTACTTGAGTTTCTTAAAGGCA
GGAAGTTCTGACATTCCAACTAACGTTATGAAACGTGCTGGCGTTGATATGACTAAACCTGATTATTTGGAAACAGCCTT
TAAGATTTTTGAGGAACGGTTAAATGAATTTGAAAAACTCGTTGAGAAATAG

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(207-588)

Oligopeptidase F (Peptidase_M3_N)

(117-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

52.862

98.507

0.521

Multiple sequence alignment