Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   A3411_RS00585 Genome accession   NZ_CP024228
Coordinates   116083..116559 (-) Length   158 a.a.
NCBI ID   WP_001186773.1    Uniprot ID   -
Organism   Escherichia coli O25:NM strain 2014EL-1343-2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 111083..121559
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A3411_RS00540 sbmC 111576..112049 (+) 474 WP_001105393.1 DNA gyrase inhibitor SbmC -
  A3411_RS00545 yeeA 112247..113305 (+) 1059 WP_001200905.1 FUSC family protein -
  A3411_RS00550 tmaR 113477..113806 (+) 330 WP_000450409.1 DUF496 family protein -
  A3411_RS27605 - 113907..114089 (-) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  A3411_RS27695 - 114152..114289 (+) 138 Protein_108 transposase domain-containing protein -
  A3411_RS26545 - 114578..114670 (-) 93 Protein_109 DUF957 domain-containing protein -
  A3411_RS00565 yeeW 114704..114898 (-) 195 WP_000988599.1 DUF5983 family protein -
  A3411_RS00570 cbtA 114895..115268 (-) 374 Protein_111 type IV toxin-antitoxin system cytoskeleton-binding toxin CbtA -
  A3411_RS00575 cbeA 115357..115725 (-) 369 WP_001285585.1 type IV toxin-antitoxin system cytoskeleton bundling-enhancing antitoxin CbeA -
  A3411_RS00580 yeeT 115799..116020 (-) 222 WP_000692323.1 DUF987 domain-containing protein -
  A3411_RS00585 radC 116083..116559 (-) 477 WP_001186773.1 RadC family protein Machinery gene
  A3411_RS00590 - 116575..117054 (-) 480 WP_000860076.1 antirestriction protein -
  A3411_RS00595 - 117136..117954 (-) 819 WP_074483047.1 DUF932 domain-containing protein -
  A3411_RS00600 - 118024..119142 (+) 1119 Protein_117 IS3 family transposase -
  A3411_RS00605 - 120002..120166 (+) 165 WP_001128468.1 hypothetical protein -
  A3411_RS27165 - 120139..120327 (+) 189 Protein_119 IS4 family transposase -
  A3411_RS27170 - 120336..120497 (+) 162 Protein_120 cobalamin biosynthesis protein -
  A3411_RS00615 cobU 120631..121177 (+) 547 Protein_121 bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17688.29 Da        Isoelectric Point: 7.2020

>NTDB_id=211586 A3411_RS00585 WP_001186773.1 116083..116559(-) (radC) [Escherichia coli O25:NM strain 2014EL-1343-2]
MQQLSFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGNQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=211586 A3411_RS00585 WP_001186773.1 116083..116559(-) (radC) [Escherichia coli O25:NM strain 2014EL-1343-2]
ATGCAACAACTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAATTCCGGGTGCTGTATCTGAATAACCAGAATCAACTGATTGCCGGTGAAACCCTCTTTACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTGCTGGCACA
CAATCACCCCTCCGGTGAAGTCACACCCAGTAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAACCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

54.867

71.519

0.392