Detailed information NTG0211568

Bioinformatically predicted

Overview

• Name: rapC
• Type: Regulator
• Locus tag: BUN12_RS18070
• Genome accession: NZ_CP018902
• Coordinates: 3483724..3484872 (+)
• Length: 382 a.a.
• NCBI ID: WP_013351004.1
• Uniprot ID: -
• Organism: Bacillus amyloliquefaciens strain HK1
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 3478724..3489872

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BUN12_RS18050 (BUN12_3512)	-	3479119..3479802 (-)	684	WP_013351000.1	ABC transporter ATP-binding protein	-
BUN12_RS18055 (BUN12_3513)	-	3479817..3481253 (-)	1437	WP_013351001.1	ABC transporter permease	-
BUN12_RS18060 (BUN12_3514)	-	3481466..3482149 (+)	684	WP_013351002.1	response regulator transcription factor	-
BUN12_RS18065 (BUN12_3515)	-	3482136..3483563 (+)	1428	WP_161988189.1	sensor histidine kinase	-
BUN12_RS18070 (BUN12_3516)	rapC	3483724..3484872 (+)	1149	WP_013351004.1	tetratricopeptide repeat protein	Regulator
BUN12_RS18075 (BUN12_3517)	phrC	3484856..3484975 (+)	120	WP_013351005.1	PhrC/PhrF family phosphatase-inhibitory pheromone	Regulator
BUN12_RS18080 (BUN12_3518)	-	3485123..3485224 (-)	102	WP_013351006.1	YjcZ family sporulation protein	-
BUN12_RS18085 (BUN12_3519)	-	3485319..3486683 (-)	1365	WP_013351007.1	aspartate kinase	-
BUN12_RS18090 (BUN12_3520)	ceuB	3487097..3488050 (+)	954	WP_013351008.1	ABC transporter permease	Machinery gene
BUN12_RS18095 (BUN12_3521)	-	3488040..3488987 (+)	948	WP_003156331.1	iron chelate uptake ABC transporter family permease subunit	-
BUN12_RS18100 (BUN12_3522)	-	3488981..3489739 (+)	759	WP_013351009.1	ABC transporter ATP-binding protein	-

Sequence

Protein

• Length: 382 a.a.
• Molecular weight: 45545.80 Da
• Isoelectric Point: 5.0674

>NTDB_id=211568 BUN12_RS18070 WP_013351004.1 3483724..3484872(+) (rapC) [Bacillus amyloliquefaciens strain HK1]
MKSGLIPSSAVGQKINEWYRYIRTFSVPDAEILKAEIKQELDHMEPDSNLVLYYSLMEFRHQLMLDYLEPLEKLKIEDQP
TLSEILDNIDNSQAGLKGLLDYYVNFFKGMFEFDKREFISAITYYKQAEKKLAFVSDHVERAEFYFKVAEAYYHMKQTYF
SLIHIKNAYEIYVEQDTYNVRIIQCHFVFGVNLMDERRFEQAAKHFQHALQMAEKEQKAQLVGRALYNLGLCYYNQNRID
EAIPYFERAVDTFESQRIVNSLPQAYFLITLIYFKLGKKDKASEYHKRGYEYAKETDDPVYTVKFEWLQALYQAKPDEEK
ISACFRYLEDKNLYADIEDLALEAAKYYYEQNCFKISSDYFLKVEEARKQIQRSEGLYEIEI

Nucleotide

• Length: 1149 bp

>NTDB_id=211568 BUN12_RS18070 WP_013351004.1 3483724..3484872(+) (rapC) [Bacillus amyloliquefaciens strain HK1]
ATGAAGAGCGGGTTAATTCCTTCTTCAGCAGTCGGGCAGAAGATTAACGAGTGGTACCGATACATAAGAACATTCAGCGT
GCCGGATGCAGAGATCTTGAAGGCCGAGATCAAACAAGAGCTTGACCATATGGAGCCTGATTCGAACTTAGTACTTTATT
ATTCCCTCATGGAATTTCGCCATCAGCTGATGCTGGACTATTTGGAGCCGCTGGAGAAATTGAAAATAGAAGACCAGCCG
ACCCTGTCGGAAATTCTCGATAACATAGATAACAGCCAGGCCGGGCTCAAAGGGCTTCTCGATTATTACGTCAACTTTTT
CAAAGGCATGTTTGAATTTGATAAAAGAGAATTTATATCAGCGATTACGTATTATAAACAGGCTGAGAAAAAACTGGCCT
TCGTATCGGACCACGTGGAGCGGGCGGAGTTTTATTTTAAAGTGGCCGAAGCTTATTATCATATGAAACAAACGTATTTT
TCTTTGATACATATAAAAAACGCTTATGAAATTTACGTAGAGCAGGACACATACAACGTCCGGATCATTCAATGCCATTT
TGTATTCGGCGTCAATTTAATGGATGAAAGACGTTTTGAACAGGCGGCCAAACATTTTCAGCACGCTCTGCAAATGGCCG
AAAAAGAACAAAAAGCGCAGCTTGTCGGGAGGGCGCTGTATAACCTCGGACTGTGCTACTACAATCAGAACCGCATCGAT
GAAGCCATACCGTACTTTGAACGGGCAGTTGATACATTTGAATCACAAAGAATCGTCAATTCTCTCCCTCAGGCATATTT
TCTAATCACACTTATTTACTTTAAACTCGGAAAAAAAGATAAAGCATCGGAATATCACAAGCGGGGATATGAATATGCTA
AAGAAACAGACGATCCCGTTTACACGGTAAAATTCGAATGGCTGCAGGCTCTGTATCAGGCGAAACCGGATGAGGAAAAA
ATCAGCGCATGTTTCCGTTACCTCGAAGATAAAAATTTATACGCCGATATAGAGGATTTAGCACTAGAAGCAGCTAAATA
TTACTATGAACAAAATTGCTTTAAAATTTCTTCTGACTATTTTCTGAAAGTCGAAGAGGCAAGGAAACAAATACAAAGGA
GTGAGGGTTTGTATGAAATTGAAATCTAA

Domains

Predicted by InterproScan.

• response regulator aspartate phosphatase H, N terminal (RapH_N) (6-66)

• Tetratricopeptide repeat (TPR_12) (223-294)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapC	Bacillus subtilis subsp. subtilis str. 168	82.723	100	0.827
rapF	Bacillus subtilis subsp. subtilis str. 168	57.368	99.476	0.571