Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   BUN12_RS16185 Genome accession   NZ_CP018902
Coordinates   3109104..3110216 (+) Length   370 a.a.
NCBI ID   WP_064778483.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain HK1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3104104..3115216
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BUN12_RS16160 (BUN12_3178) rnpA 3104812..3105162 (-) 351 WP_013354275.1 ribonuclease P protein component -
  BUN12_RS16165 rpmH 3105315..3105449 (-) 135 WP_003178075.1 50S ribosomal protein L34 -
  BUN12_RS16170 (BUN12_3179) dnaA 3106071..3107411 (+) 1341 WP_013350722.1 chromosomal replication initiator protein DnaA -
  BUN12_RS16175 (BUN12_3180) dnaN 3107597..3108733 (+) 1137 WP_014469588.1 DNA polymerase III subunit beta -
  BUN12_RS16180 (BUN12_3181) rlbA 3108873..3109088 (+) 216 WP_004392910.1 ribosome maturation protein RlbA -
  BUN12_RS16185 (BUN12_3182) recF 3109104..3110216 (+) 1113 WP_064778483.1 DNA replication/repair protein RecF Machinery gene
  BUN12_RS16190 (BUN12_3183) remB 3110234..3110479 (+) 246 WP_004392908.1 extracellular matrix regulator RemB -
  BUN12_RS16195 (BUN12_3184) gyrB 3110536..3112452 (+) 1917 WP_014469589.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  BUN12_RS16200 (BUN12_3185) gyrA 3112669..3115128 (+) 2460 WP_013350726.1 DNA gyrase subunit A -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 42356.33 Da        Isoelectric Point: 7.3310

>NTDB_id=211560 BUN12_RS16185 WP_064778483.1 3109104..3110216(+) (recF) [Bacillus amyloliquefaciens strain HK1]
MYIQNLELTSYRNYERAELQFENKVNVIIGENAQGKTNLMEAIYVLSMAKSHRTSNDKELIRWDEDYAKIEGRVMKRNGD
IPMQLVISKKGKKGKVNHIEQQKLSQYVGALNTIMFAPEDLNLVKGSPQVRRRFLDMEIGQVSAVYLYDLSLYQKILSQR
NHFLKQLQSRKQTDRTMLDVLTDQLIEAAAKVVAKRLQFTAQLEKWAQPIHSGISRGLEELTLKYHTALDVSDPKDLSKI
GNSYQESFSKLKEKEIERGVTLFGPHRDDVLFYVNGRDVQTYGSQGQQRTTALSLKLAEIDLIHEEIGEYPILLLDDVLS
ELDDYRQSHLLHTIQGRVQTFVTTTSVDGIGHETLHQAGMFRVENGALVK

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=211560 BUN12_RS16185 WP_064778483.1 3109104..3110216(+) (recF) [Bacillus amyloliquefaciens strain HK1]
TTGTATATCCAAAATTTAGAATTAACATCCTACCGTAATTATGAGCGCGCTGAGCTTCAATTCGAAAACAAGGTGAATGT
GATCATCGGGGAAAATGCCCAAGGCAAAACCAATCTGATGGAAGCCATCTATGTTCTTTCGATGGCAAAATCGCACCGCA
CCTCAAATGATAAAGAACTTATACGGTGGGACGAAGACTATGCTAAAATAGAAGGAAGAGTGATGAAGCGCAACGGGGAC
ATCCCGATGCAGCTGGTCATCTCCAAAAAAGGTAAAAAGGGCAAAGTCAATCATATAGAGCAGCAAAAACTCAGTCAGTA
TGTCGGAGCGCTGAACACCATTATGTTTGCCCCCGAGGACTTAAATCTCGTTAAAGGCAGCCCTCAGGTGAGGAGGAGAT
TTCTTGATATGGAGATCGGGCAGGTATCTGCCGTTTATCTGTATGATTTATCTCTTTATCAAAAAATCCTTTCCCAGCGG
AATCATTTTCTGAAACAGCTGCAAAGCCGGAAACAGACTGACCGGACCATGCTTGACGTTCTCACTGATCAGCTGATTGA
AGCAGCCGCGAAAGTTGTCGCCAAACGTCTGCAGTTTACGGCACAGCTTGAAAAATGGGCGCAGCCGATCCATTCCGGCA
TTTCCCGGGGACTTGAGGAACTGACGCTTAAGTATCACACGGCGCTTGATGTATCAGATCCCAAAGATTTGTCGAAAATA
GGTAACAGCTACCAGGAGTCTTTTTCGAAATTAAAAGAAAAAGAAATAGAACGAGGCGTCACATTATTCGGGCCGCATCG
GGATGATGTCCTTTTTTATGTGAACGGACGCGATGTGCAGACTTACGGTTCGCAGGGACAGCAGCGTACGACGGCTTTGT
CTTTGAAGCTGGCCGAAATAGATTTAATTCATGAAGAAATCGGAGAATATCCCATTTTACTTTTGGATGATGTACTAAGC
GAGCTGGATGATTACCGCCAGTCCCATTTGCTTCATACAATCCAAGGCCGTGTGCAGACATTTGTCACCACGACGAGTGT
GGATGGCATTGGCCACGAAACCTTACATCAAGCAGGAATGTTCCGTGTGGAAAACGGTGCGTTAGTGAAGTGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-346)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

94.595

100

0.946

Multiple sequence alignment