Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   BUN12_RS11235 Genome accession   NZ_CP018902
Coordinates   2150518..2151162 (-) Length   214 a.a.
NCBI ID   WP_013353394.1    Uniprot ID   A0A9P1NIP1
Organism   Bacillus amyloliquefaciens strain HK1     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 2145518..2156162
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BUN12_RS11200 (BUN12_2194) - 2146703..2147134 (+) 432 WP_013353387.1 Na(+)/H(+) antiporter subunit B -
  BUN12_RS11205 (BUN12_2195) - 2147134..2147475 (+) 342 WP_013353388.1 Na(+)/H(+) antiporter subunit C -
  BUN12_RS11210 (BUN12_2196) - 2147468..2148949 (+) 1482 WP_013353389.1 Na+/H+ antiporter subunit D -
  BUN12_RS11215 (BUN12_2197) - 2148955..2149431 (+) 477 WP_013353390.1 Na+/H+ antiporter subunit E -
  BUN12_RS11220 (BUN12_2198) - 2149431..2149715 (+) 285 WP_013353391.1 Na(+)/H(+) antiporter subunit F1 -
  BUN12_RS11225 (BUN12_2199) mnhG 2149699..2150073 (+) 375 WP_013353392.1 monovalent cation/H(+) antiporter subunit G -
  BUN12_RS11230 (BUN12_2200) - 2150113..2150496 (-) 384 WP_013353393.1 hotdog fold thioesterase -
  BUN12_RS11235 (BUN12_2201) comA 2150518..2151162 (-) 645 WP_013353394.1 response regulator transcription factor Regulator
  BUN12_RS11240 (BUN12_2202) comP 2151243..2153549 (-) 2307 WP_013353395.1 sensor histidine kinase Regulator
  BUN12_RS11245 (BUN12_2203) comX 2153572..2153748 (-) 177 WP_013353396.1 competence pheromone ComX -
  BUN12_RS11250 (BUN12_2204) - 2153767..2154642 (-) 876 WP_013353397.1 polyprenyl synthetase family protein -
  BUN12_RS11255 (BUN12_2205) degQ 2154794..2154934 (-) 141 WP_013353398.1 degradation enzyme regulation protein DegQ Regulator
  BUN12_RS11265 (BUN12_2206) - 2155399..2155740 (+) 342 WP_013353399.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24271.68 Da        Isoelectric Point: 4.9953

>NTDB_id=211544 BUN12_RS11235 WP_013353394.1 2150518..2151162(-) (comA) [Bacillus amyloliquefaciens strain HK1]
MKKILVIDDHPAVMEGTKTMLETDTNLSVDCLSPDASEQFVLRHDFSAYDLILMDLNLGDDLSGIELSKKILKENPLCKI
IVYTGYEVEDYFEESIRAGLHGAISKTESKEKIMQYIYHVLNGQILVDFSYFKQLLTQQKTKTSSSPQSEQDRLTPRERH
ILQEVEKGLTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDNVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=211544 BUN12_RS11235 WP_013353394.1 2150518..2151162(-) (comA) [Bacillus amyloliquefaciens strain HK1]
ATGAAAAAGATACTAGTGATTGATGATCATCCGGCTGTCATGGAGGGCACCAAGACGATGCTGGAAACGGACACGAATCT
TTCTGTCGATTGCCTTAGTCCCGATGCCAGTGAACAATTCGTTCTTCGGCATGATTTTTCAGCTTACGATCTCATATTAA
TGGATTTAAATCTGGGTGATGACCTCAGCGGCATAGAGCTTTCCAAGAAAATCTTAAAAGAGAATCCTCTCTGCAAAATC
ATTGTTTACACAGGTTATGAGGTTGAAGATTATTTTGAAGAATCCATCCGCGCGGGTCTGCACGGTGCCATCAGCAAAAC
CGAGTCTAAAGAGAAAATCATGCAATACATATATCACGTGCTTAACGGACAGATTTTAGTTGATTTCTCCTATTTCAAAC
AGCTGTTGACCCAGCAAAAAACAAAAACGTCTTCTTCCCCTCAAAGTGAGCAGGATCGGTTAACACCGAGAGAGCGCCAT
ATTCTTCAAGAGGTCGAAAAAGGTTTGACCAATCAGGAAATCGCCGATGCGCTTCACTTAAGCAAGCGGTCGATTGAATA
CAGCCTGACATCCATTTTTAACAAGCTGAATGTCGGCTCCCGTACAGAAGCGGTGCTGATCGCCAAGTCAGATAACGTAC
TATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-117)

Bacterial regulatory proteins, luxR family (GerE)

(153-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

85.514

100

0.855

Multiple sequence alignment