Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   CJV63_RS11140 Genome accession   NZ_CP024223
Coordinates   2198275..2198751 (+) Length   158 a.a.
NCBI ID   WP_001186201.1    Uniprot ID   -
Organism   Escherichia coli O169:H41 strain 2014EL-1345-2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2193275..2203751
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CJV63_RS11105 - 2193752..2193946 (-) 195 WP_001304548.1 hypothetical protein -
  CJV63_RS11110 - 2193940..2194824 (+) 885 WP_000010385.1 YfjP family GTPase -
  CJV63_RS11115 - 2195027..2195707 (+) 681 WP_001484790.1 WYL domain-containing protein -
  CJV63_RS11120 - 2195858..2196535 (+) 678 WP_001097567.1 hypothetical protein -
  CJV63_RS11125 - 2196541..2196774 (+) 234 WP_024204967.1 DUF905 family protein -
  CJV63_RS11130 - 2196864..2197682 (+) 819 WP_001175173.1 DUF932 domain-containing protein -
  CJV63_RS11135 - 2197774..2198259 (+) 486 WP_000213721.1 antirestriction protein -
  CJV63_RS11140 radC 2198275..2198751 (+) 477 WP_001186201.1 RadC family protein Machinery gene
  CJV63_RS11145 - 2198820..2199041 (+) 222 WP_000692303.1 DUF987 domain-containing protein -
  CJV63_RS11150 - 2199204..2199572 (+) 369 WP_001285645.1 type IV toxin-antitoxin system YeeU family antitoxin -
  CJV63_RS11155 - 2199662..2200036 (+) 375 WP_000854775.1 TA system toxin CbtA family protein -
  CJV63_RS11160 - 2200033..2200524 (+) 492 WP_000976825.1 DUF5983 family protein -
  CJV63_RS11165 - 2200536..2200733 (+) 198 WP_000772035.1 DUF957 domain-containing protein -
  CJV63_RS11170 - 2200818..2201660 (+) 843 WP_001274548.1 DUF4942 domain-containing protein -
  CJV63_RS11180 rhuM 2201898..2202062 (+) 165 Protein_2080 RhuM family protein -
  CJV63_RS11185 setC 2202459..2203643 (+) 1185 WP_001719114.1 sugar efflux transporter -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17660.24 Da        Isoelectric Point: 6.9859

>NTDB_id=211543 CJV63_RS11140 WP_001186201.1 2198275..2198751(+) (radC) [Escherichia coli O169:H41 strain 2014EL-1345-2]
MQQISFLSGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTHAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALALVDIRVPDHLIIGGSQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=211543 CJV63_RS11140 WP_001186201.1 2198275..2198751(+) (radC) [Escherichia coli O169:H41 strain 2014EL-1345-2]
ATGCAACAGATTTCCTTTCTGTCCGGAGAGATGACACCCGGTGAGCGCAGTCTCATTCAGCGGGCCCTGAAAACCCTGGA
CCGTCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACGCATGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAGTTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCTCTGTACCACAATGCCGCTGCCGTGGTGCTGGCACA
CAATCACCCGTCCGGTGAAGTCACCCCCAGTAAGGCTGACCGCCTTATTACGGAACGTCTGGTTCAGGCGCTGGCCCTGG
TGGATATCCGGGTACCGGACCATCTGATAATCGGTGGCAGTCAGGTTTTCTCCTTTGCCGAACACGGCCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

58.654

65.823

0.386