Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   CJV63_RS10830 Genome accession   NZ_CP024223
Coordinates   2133467..2134135 (-) Length   222 a.a.
NCBI ID   WP_001297375.1    Uniprot ID   P65957
Organism   Escherichia coli O169:H41 strain 2014EL-1345-2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2128467..2139135
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CJV63_RS10800 rfaQ 2128645..2129703 (-) 1059 WP_000360402.1 lipopolysaccharide core heptosyltransferase RfaQ -
  CJV63_RS10805 waaA 2130116..2131393 (+) 1278 WP_000891560.1 lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase -
  CJV63_RS10810 coaD 2131401..2131880 (+) 480 WP_099490870.1 pantetheine-phosphate adenylyltransferase -
  CJV63_RS10815 mutM 2131919..2132728 (-) 810 WP_001114533.1 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase -
  CJV63_RS10820 rpmG 2132826..2132993 (-) 168 WP_001051798.1 50S ribosomal protein L33 -
  CJV63_RS10825 rpmB 2133014..2133250 (-) 237 WP_000091955.1 50S ribosomal protein L28 -
  CJV63_RS10830 radC 2133467..2134135 (-) 669 WP_001297375.1 DNA repair protein RadC Machinery gene
  CJV63_RS10835 coaBC 2134307..2135527 (+) 1221 WP_001614110.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  CJV63_RS10840 dut 2135505..2135963 (+) 459 WP_000976070.1 dUTP diphosphatase -
  CJV63_RS10845 slmA 2136070..2136666 (+) 597 WP_000818601.1 nucleoid occlusion factor SlmA -
  CJV63_RS10850 pyrE 2136703..2137344 (-) 642 WP_000806154.1 orotate phosphoribosyltransferase -
  CJV63_RS10855 rph 2137410..2138126 (-) 717 WP_001614112.1 ribonuclease PH -
  CJV63_RS10865 yicC 2138253..2139116 (+) 864 WP_000621340.1 YicC/YloC family endoribonuclease -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 25258.35 Da        Isoelectric Point: 7.9748

>NTDB_id=211541 CJV63_RS10830 WP_001297375.1 2133467..2134135(-) (radC) [Escherichia coli O169:H41 strain 2014EL-1345-2]
MKNNAQLLMPREKMLKFGISALTDVELLALFLRTGTRGKDVLTLAKEMLENFGSLYGLLTSEYEQFSGVHGIGVAKFAQL
KGIAELARRYYNVRMREESPLLSPEMTREFLQSQLTGEEREIFMVIFLDSQHRVITHSRLFSGTLNHVEVHPREIIREAI
KINASALILAHNHPSGCAEPSKADKLITERIIKSCQFMDLRVLDHIVIGRGEYVSFAERGWI

Nucleotide


Download         Length: 669 bp        

>NTDB_id=211541 CJV63_RS10830 WP_001297375.1 2133467..2134135(-) (radC) [Escherichia coli O169:H41 strain 2014EL-1345-2]
GTGAAAAACAATGCACAGCTGTTGATGCCGCGCGAAAAAATGCTGAAGTTTGGTATTAGCGCCTTAACGGATGTCGAGCT
GCTGGCGCTATTTCTGCGTACCGGAACGCGCGGTAAAGATGTATTAACCCTGGCAAAAGAGATGCTGGAGAATTTCGGCT
CTCTTTATGGCTTGTTAACCTCTGAATATGAACAATTTAGTGGTGTTCATGGAATTGGCGTGGCGAAATTTGCCCAGTTA
AAGGGGATTGCTGAATTGGCGCGGCGTTACTACAACGTGCGGATGCGTGAAGAAAGCCCTTTACTCAGCCCGGAGATGAC
GAGGGAATTTTTACAAAGCCAGCTCACGGGTGAGGAGCGGGAGATCTTTATGGTGATCTTTCTCGACTCACAACACCGGG
TTATAACGCATAGCCGTCTTTTTTCCGGCACGCTAAACCATGTTGAAGTCCATCCTCGGGAAATTATCCGCGAAGCGATA
AAAATAAACGCCTCGGCGCTGATCCTTGCACATAATCACCCTTCGGGTTGTGCTGAACCCAGTAAAGCGGATAAACTCAT
TACTGAACGGATAATAAAGAGTTGTCAGTTCATGGATTTACGCGTGCTCGACCATATCGTGATTGGGCGTGGAGAGTATG
TTTCTTTTGCCGAACGCGGCTGGATTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(103-220)

UPF0758 N-terminal (UPF0758_N)

(9-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P65957

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

49.55

100

0.496