Detailed information NTG0211525

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: CJV63_RS05880
• Genome accession: NZ_CP024223
• Coordinates: 1166524..1167516 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli O169:H41 strain 2014EL-1345-2
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1161524..1172516

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CJV63_RS05855	ygbN	1162179..1163543 (+)	1365	WP_032201353.1	GntP family transporter	-
CJV63_RS05860	-	1163583..1163819 (-)	237	WP_000562982.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
CJV63_RS05865	-	1163830..1165257 (-)	1428	WP_032201352.1	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
CJV63_RS05870	-	1165257..1165850 (-)	594	WP_000767723.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
CJV63_RS05875	-	1165997..1166404 (+)	408	WP_001718752.1	MarR family transcriptional regulator	-
CJV63_RS05880	rpoS	1166524..1167516 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
CJV63_RS05885	nlpD	1167579..1168673 (-)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
CJV63_RS05890	pcm	1168858..1169484 (-)	627	WP_001718755.1	protein-L-isoaspartate O-methyltransferase	-
CJV63_RS05895	surE	1169478..1170239 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
CJV63_RS05900	truD	1170220..1171269 (-)	1050	WP_000568962.1	tRNA pseudouridine(13) synthase TruD	-
CJV63_RS05905	ispF	1171266..1171745 (-)	480	WP_001718756.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
CJV63_RS05910	ispD	1171745..1172455 (-)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=211525 CJV63_RS05880 WP_000081550.1 1166524..1167516(-) (rpoS) [Escherichia coli O169:H41 strain 2014EL-1345-2]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=211525 CJV63_RS05880 WP_000081550.1 1166524..1167516(-) (rpoS) [Escherichia coli O169:H41 strain 2014EL-1345-2]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTTCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTACTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAATAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715