Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   CJV63_RS05580 Genome accession   NZ_CP024223
Coordinates   1109947..1110462 (-) Length   171 a.a.
NCBI ID   WP_001130211.1    Uniprot ID   A0ABR8T9Y4
Organism   Escherichia coli O169:H41 strain 2014EL-1345-2     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1104947..1115462
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CJV63_RS05560 emrA 1105097..1106269 (+) 1173 WP_099490851.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  CJV63_RS05565 emrB 1106286..1107824 (+) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  CJV63_RS05570 - 1108082..1108789 (+) 708 WP_001613653.1 RNA ligase family protein -
  CJV63_RS05575 - 1108786..1109898 (+) 1113 Protein_1041 AAA family ATPase -
  CJV63_RS05580 luxS 1109947..1110462 (-) 516 WP_001130211.1 S-ribosylhomocysteine lyase Regulator
  CJV63_RS05585 gshA 1110612..1112168 (-) 1557 WP_001613656.1 glutamate--cysteine ligase -
  CJV63_RS05590 yqaA 1112241..1112669 (-) 429 WP_001287454.1 YqaA family protein -
  CJV63_RS05595 yqaB 1112666..1113232 (-) 567 WP_000273309.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  CJV63_RS05625 csrA 1114423..1114608 (-) 186 WP_000906486.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19416.19 Da        Isoelectric Point: 5.0362

>NTDB_id=211522 CJV63_RS05580 WP_001130211.1 1109947..1110462(-) (luxS) [Escherichia coli O169:H41 strain 2014EL-1345-2]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=211522 CJV63_RS05580 WP_001130211.1 1109947..1110462(-) (luxS) [Escherichia coli O169:H41 strain 2014EL-1345-2]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATTCCGGAGCTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTGCGCATCAACAGCAACGAAGAACTGGCG
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATTTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731

Multiple sequence alignment