Detailed information    

insolico Bioinformatically predicted

Overview

Name   kpsS   Type   Regulator
Locus tag   BU815_RS07085 Genome accession   NZ_CP018900
Coordinates   1378631..1379815 (-) Length   394 a.a.
NCBI ID   WP_002814385.1    Uniprot ID   -
Organism   Campylobacter coli strain YH502     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 1373631..1384815
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BU815_RS07060 (BU815_07090) fliL 1374769..1375305 (+) 537 WP_002779164.1 flagellar basal body-associated protein FliL -
  BU815_RS07065 (BU815_07095) acpS 1375305..1375652 (+) 348 WP_002779165.1 holo-ACP synthase -
  BU815_RS07070 (BU815_07100) - 1375656..1376078 (-) 423 WP_057991702.1 hypothetical protein -
  BU815_RS07075 (BU815_07105) - 1376075..1377445 (-) 1371 WP_075395251.1 cytochrome P450 -
  BU815_RS07080 (BU815_07110) - 1377442..1378563 (-) 1122 WP_002814384.1 hypothetical protein -
  BU815_RS07085 (BU815_07115) kpsS 1378631..1379815 (-) 1185 WP_002814385.1 capsule biosynthesis protein Regulator
  BU815_RS07090 (BU815_07120) - 1379812..1381839 (-) 2028 WP_075395252.1 capsular polysaccharide biosynthesis protein -
  BU815_RS10155 (BU815_07125) - 1381898..1383844 (-) 1947 WP_229024394.1 hypothetical protein -

Sequence

Protein


Download         Length: 394 a.a.        Molecular weight: 46580.41 Da        Isoelectric Point: 10.0887

>NTDB_id=211489 BU815_RS07085 WP_002814385.1 1378631..1379815(-) (kpsS) [Campylobacter coli strain YH502]
MKFRDKIKKEFSGKNVLLLQGPVGTFFHRLAIKMKKNKTKVFKLNFNGGDFLFYPSGKRCKCDEKDLENFYESFFKDKKI
DAIVMYNDCRLIHAKAIKVAKGLGIGIWIFEEGYLRPYCITFEKDGVNANSSLPRDKNFYLSCNILTKESIKEIPGGFKF
MAFSAFLYWLFSFLLAPFFNNKLHHRTLFPFEFLFWFRSLYRKYLYKLTEKKLNQKIYSLEKKYFLAILQVYNDTQIKHH
YKKSIEEFIEELILSFANHARAKSYLVFKHHPMDRGYRNYSKLINELSQKYHVEGRILYVHDTYLPTLLKKALGCITINS
TVGLSAILEGCPTKVCGNAFYDFEGLAYPKKLQFFWREAHAYKPNPNLVLNFKNYLLNTNQFNGNFYKNSFLSR

Nucleotide


Download         Length: 1185 bp        

>NTDB_id=211489 BU815_RS07085 WP_002814385.1 1378631..1379815(-) (kpsS) [Campylobacter coli strain YH502]
ATGAAATTTAGAGATAAGATTAAAAAAGAATTTAGTGGTAAAAATGTCTTGCTTTTACAAGGACCTGTAGGGACTTTTTT
TCACCGCCTTGCTATAAAGATGAAAAAAAATAAAACCAAAGTTTTTAAGCTTAATTTTAACGGAGGGGATTTTCTTTTCT
ATCCAAGTGGAAAAAGGTGCAAGTGCGACGAAAAGGATCTTGAAAATTTTTATGAGAGCTTTTTTAAAGACAAAAAGATA
GATGCTATTGTGATGTATAATGATTGCCGTTTGATCCATGCAAAAGCTATCAAAGTAGCTAAGGGGCTTGGCATTGGTAT
TTGGATTTTTGAAGAGGGGTATTTAAGGCCTTATTGTATCACTTTTGAAAAAGATGGGGTCAATGCAAACTCCTCCTTGC
CTCGCGATAAAAATTTCTATCTTTCTTGCAATATCCTTACAAAAGAAAGCATAAAAGAAATTCCAGGTGGTTTTAAATTT
ATGGCTTTTAGTGCTTTTTTGTATTGGCTTTTTTCTTTTCTGCTAGCTCCTTTTTTTAACAACAAGCTTCATCATCGCAC
CTTATTTCCTTTTGAATTTTTATTTTGGTTTAGATCTTTATATAGAAAATATCTTTATAAACTCACAGAAAAAAAACTTA
ATCAAAAAATTTATAGCCTTGAAAAAAAGTACTTTTTGGCTATTTTGCAAGTTTATAATGATACGCAAATTAAGCACCAT
TATAAAAAAAGCATAGAAGAATTTATAGAAGAGCTTATCCTTTCTTTTGCAAATCACGCAAGAGCAAAGTCTTATCTTGT
CTTTAAACATCATCCTATGGATAGGGGATATAGAAATTATTCTAAACTTATAAATGAGCTAAGTCAAAAATACCATGTAG
AAGGAAGAATTTTATATGTGCACGATACTTATTTACCTACTCTTTTAAAAAAGGCTTTGGGTTGCATCACGATTAATTCT
ACAGTGGGTTTAAGTGCTATTTTGGAGGGCTGTCCTACTAAGGTTTGTGGCAATGCTTTTTATGATTTTGAAGGCCTAGC
TTATCCTAAAAAACTCCAATTTTTTTGGCGCGAAGCTCATGCTTACAAACCCAATCCTAATTTGGTTTTAAATTTCAAAA
ACTATCTTTTAAATACAAATCAATTCAACGGCAATTTTTACAAAAATTCTTTTTTAAGTCGATAA

Domains

Predicted by InterproScan.

Capsule polysaccharide biosynthesis protein (Capsule_synth)

(81-387)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kpsS Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

87.563

100

0.876

Multiple sequence alignment