Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE1/comEA   Type   Machinery gene
Locus tag   KSH_RS10735 Genome accession   NZ_CP024180
Coordinates   2412496..2412879 (+) Length   127 a.a.
NCBI ID   WP_100285318.1    Uniprot ID   -
Organism   Moraxella osloensis strain KSH     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2407496..2417879
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KSH_RS10715 (KSH_11980) - 2407662..2408285 (+) 624 WP_100285314.1 thiol:disulfide interchange protein DsbA/DsbL -
  KSH_RS10720 (KSH_11985) - 2408406..2409860 (-) 1455 WP_100285315.1 phosphomannomutase CpsG -
  KSH_RS10725 (KSH_11990) - 2409944..2411143 (-) 1200 WP_100285316.1 nucleotide sugar dehydrogenase -
  KSH_RS10730 (KSH_11995) mazG 2411471..2412295 (+) 825 WP_100285317.1 nucleoside triphosphate pyrophosphohydrolase -
  KSH_RS10735 (KSH_12000) comE1/comEA 2412496..2412879 (+) 384 WP_100285318.1 ComEA family DNA-binding protein Machinery gene
  KSH_RS10740 (KSH_12005) pcnB 2413122..2415353 (+) 2232 WP_100285319.1 polynucleotide adenylyltransferase PcnB -
  KSH_RS10745 (KSH_12010) folK 2415350..2415844 (+) 495 WP_100285320.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  KSH_RS10750 (KSH_12015) panB 2416052..2416933 (+) 882 WP_198510956.1 3-methyl-2-oxobutanoate hydroxymethyltransferase -

Sequence

Protein


Download         Length: 127 a.a.        Molecular weight: 13438.62 Da        Isoelectric Point: 10.4804

>NTDB_id=211454 KSH_RS10735 WP_100285318.1 2412496..2412879(+) (comE1/comEA) [Moraxella osloensis strain KSH]
MIFRLLFGSIFAILVLSISAVPAQAQVCTPTMTPEQAFLAVTNLTGTNGGTTKPSANVLANSPKVININTASEAQLTQLD
GIGAKKAQQIILYRQMIAPFATADDLANVKGIGKATVDKNRHRITTQ

Nucleotide


Download         Length: 384 bp        

>NTDB_id=211454 KSH_RS10735 WP_100285318.1 2412496..2412879(+) (comE1/comEA) [Moraxella osloensis strain KSH]
ATGATTTTTCGATTATTATTTGGCTCAATTTTTGCCATTTTAGTTCTAAGTATATCGGCAGTGCCCGCACAGGCGCAAGT
ATGTACCCCAACCATGACGCCCGAGCAGGCTTTTTTGGCAGTGACAAATTTGACTGGGACTAACGGTGGCACCACAAAAC
CCTCTGCAAATGTCCTTGCCAATTCACCCAAAGTGATTAATATCAATACAGCCAGTGAAGCACAGCTTACACAGCTTGAT
GGTATCGGCGCCAAAAAAGCCCAACAAATTATTTTATACCGGCAAATGATAGCGCCGTTTGCCACAGCGGATGACCTAGC
CAACGTCAAAGGTATCGGTAAAGCGACTGTCGATAAAAATCGCCACCGCATTACCACCCAATAA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(65-125)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE1/comEA Haemophilus influenzae Rd KW20

40.351

89.764

0.362