Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   KSH_RS01275 Genome accession   NZ_CP024180
Coordinates   274320..274682 (+) Length   120 a.a.
NCBI ID   WP_099807513.1    Uniprot ID   -
Organism   Moraxella osloensis strain KSH     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 269320..279682
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KSH_RS01265 (KSH_01265) - 271947..273197 (-) 1251 WP_198510969.1 efflux RND transporter periplasmic adaptor subunit -
  KSH_RS01270 (KSH_01270) pilG 273687..274073 (+) 387 WP_050324978.1 twitching motility response regulator PilG Regulator
  KSH_RS01275 (KSH_01275) pilH 274320..274682 (+) 363 WP_099807513.1 PleD family two-component system response regulator Machinery gene
  KSH_RS01280 (KSH_01280) - 274688..275224 (+) 537 WP_099807514.1 chemotaxis protein CheW -
  KSH_RS01285 (KSH_01285) - 275644..276678 (+) 1035 Protein_246 methyl-accepting chemotaxis protein -
  KSH_RS01290 (KSH_01290) - 276775..276990 (+) 216 WP_099807516.1 hypothetical protein -

Sequence

Protein


Download         Length: 120 a.a.        Molecular weight: 13651.78 Da        Isoelectric Point: 6.0872

>NTDB_id=211415 KSH_RS01275 WP_099807513.1 274320..274682(+) (pilH) [Moraxella osloensis strain KSH]
MAKILVVDDSPSEMAKFRYILTRHQHEVIEAHTGEDGIQKANEFFPDVILMDVVMPEMNGFQATRKITRDPKTSHIPVII
ISTKNQEADRVWGKRQGARDYLSKPITEEALITVICAVME

Nucleotide


Download         Length: 363 bp        

>NTDB_id=211415 KSH_RS01275 WP_099807513.1 274320..274682(+) (pilH) [Moraxella osloensis strain KSH]
ATGGCCAAAATCTTAGTAGTTGATGATTCACCATCAGAAATGGCAAAATTTCGATATATTTTGACTCGTCATCAGCACGA
AGTCATTGAAGCGCATACAGGCGAGGATGGAATTCAAAAAGCCAATGAGTTTTTCCCAGATGTGATTTTGATGGATGTGG
TCATGCCAGAGATGAACGGCTTCCAAGCAACCCGCAAAATTACCCGTGACCCAAAAACCAGTCATATCCCTGTCATCATC
ATCAGTACTAAAAATCAAGAAGCTGACCGCGTCTGGGGCAAGCGCCAAGGCGCACGGGATTATCTCAGCAAGCCGATTAC
AGAAGAAGCCTTAATCACTGTAATCTGCGCCGTGATGGAGTAG

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

41.739

95.833

0.4