Detailed information    

insolico Bioinformatically predicted

Overview

Name   tsaP   Type   Machinery gene
Locus tag   KSH_RS00085 Genome accession   NZ_CP024180
Coordinates   20040..21143 (+) Length   367 a.a.
NCBI ID   WP_099807358.1    Uniprot ID   -
Organism   Moraxella osloensis strain KSH     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 15040..26143
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KSH_RS00065 (KSH_00065) - 16901..17647 (-) 747 WP_007117434.1 glutathione peroxidase -
  KSH_RS00070 (KSH_00070) - 17927..18415 (+) 489 WP_036591734.1 YajQ family cyclic di-GMP-binding protein -
  KSH_RS00075 (KSH_00075) hisB 18495..19097 (-) 603 WP_007117432.1 imidazoleglycerol-phosphate dehydratase HisB -
  KSH_RS00080 (KSH_00080) def 19120..19650 (-) 531 WP_099807357.1 peptide deformylase -
  KSH_RS00085 (KSH_00085) tsaP 20040..21143 (+) 1104 WP_099807358.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  KSH_RS12285 - 21140..21277 (-) 138 WP_157819342.1 hypothetical protein -
  KSH_RS00090 (KSH_00090) dprA 21313..22542 (+) 1230 WP_099807360.1 DNA-processing protein DprA Machinery gene
  KSH_RS00095 (KSH_00095) - 22591..23196 (+) 606 WP_099807361.1 L-threonylcarbamoyladenylate synthase -
  KSH_RS00100 (KSH_00100) grpE 23420..24001 (+) 582 WP_099807363.1 nucleotide exchange factor GrpE -
  KSH_RS00105 (KSH_00105) dnaK 24163..26085 (+) 1923 WP_060994956.1 molecular chaperone DnaK -

Sequence

Protein


Download         Length: 367 a.a.        Molecular weight: 39565.51 Da        Isoelectric Point: 9.2158

>NTDB_id=211404 KSH_RS00085 WP_099807358.1 20040..21143(+) (tsaP) [Moraxella osloensis strain KSH]
MTNYNTTTMKKLSFALLATLGMTVTSVAAANNPPPRIKADAPNRYVVKKGDTLWDISGKFLESPWRWKEIWATNKHIRNP
HLIYPKDVIILCVIKGQKLVGVDTGEGCAGIEKAMNAPVTTTTVVSAAGSITAIPLTAIETWLERNIIVSPDDFKTTPYV
LASKDKNIITGVGNKIYAKGVPLIVGQRYGVYREGEPYVDPTTRKVIGLEVTQVAAGIVTSVASNGVSSIELKKSYGQEV
REGDRVFVEVGQYLPPAFYPKPASVTRGGRVIRILNSISSAGRDGVIAINLGTSQGAEPGDVLTVYQKGALVLDDYSSVK
GGAVRLPSEQIGHVMVFKAFNDISYAYVLDAESPIHEQDFLLPAVGN

Nucleotide


Download         Length: 1104 bp        

>NTDB_id=211404 KSH_RS00085 WP_099807358.1 20040..21143(+) (tsaP) [Moraxella osloensis strain KSH]
ATGACAAACTATAACACCACGACAATGAAAAAATTATCCTTCGCTTTGTTGGCAACCTTAGGTATGACAGTGACTTCAGT
GGCTGCTGCTAACAACCCGCCGCCTCGTATCAAAGCCGATGCGCCCAACCGTTACGTGGTAAAAAAAGGTGATACGCTTT
GGGATATCTCCGGCAAATTTTTAGAAAGTCCGTGGCGCTGGAAAGAAATCTGGGCGACCAATAAGCATATTCGTAATCCG
CATCTGATTTATCCAAAAGATGTGATTATCTTATGTGTGATTAAAGGGCAAAAATTGGTCGGTGTAGATACGGGTGAAGG
CTGTGCAGGCATTGAAAAAGCCATGAACGCGCCAGTCACCACAACCACCGTGGTGAGTGCTGCAGGTAGTATCACTGCGA
TTCCTTTGACTGCCATTGAAACATGGCTTGAGCGCAATATCATCGTATCGCCTGATGACTTTAAAACTACCCCCTATGTG
CTTGCTTCAAAAGATAAAAACATTATCACAGGTGTCGGTAACAAAATTTATGCCAAAGGCGTGCCACTCATTGTGGGACA
ACGCTATGGTGTGTATCGTGAGGGCGAACCGTATGTTGACCCAACCACCCGTAAAGTCATCGGTCTTGAAGTCACCCAAG
TTGCCGCAGGTATCGTCACTAGCGTAGCATCAAACGGTGTTTCTAGTATCGAGCTTAAAAAATCGTATGGTCAAGAAGTG
CGCGAAGGTGACCGTGTGTTTGTCGAAGTCGGTCAGTACTTACCACCTGCGTTTTATCCAAAACCTGCCAGCGTTACCCG
TGGCGGTCGCGTGATTCGTATTTTAAACTCAATTAGTAGTGCCGGTCGAGATGGGGTGATTGCCATTAATTTGGGCACCA
GCCAAGGCGCTGAGCCAGGCGATGTGTTGACAGTTTATCAAAAAGGCGCTTTAGTCTTGGACGACTATTCATCCGTGAAA
GGTGGGGCAGTAAGGTTGCCAAGTGAGCAAATCGGTCATGTGATGGTATTTAAAGCATTTAACGATATTAGCTACGCTTA
TGTACTCGATGCTGAATCACCAATTCATGAGCAAGATTTCTTATTGCCTGCGGTCGGCAACTAA

Domains

Predicted by InterProScan.

LysM domain (LysM)

(45-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tsaP Acinetobacter baumannii D1279779

42.391

100

0.425

Multiple sequence alignment