Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   YHS_RS11075 Genome accession   NZ_CP024176
Coordinates   2503364..2503747 (+) Length   127 a.a.
NCBI ID   WP_100274295.1    Uniprot ID   -
Organism   Moraxella osloensis strain YHS     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2498364..2508747
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  YHS_RS11055 (YHS_12195) - 2498472..2499095 (+) 624 WP_040403627.1 thiol:disulfide interchange protein DsbA/DsbL -
  YHS_RS11060 (YHS_12200) - 2499234..2500688 (-) 1455 WP_100274292.1 phosphomannomutase CpsG -
  YHS_RS11065 (YHS_12205) - 2500786..2502009 (-) 1224 WP_100274293.1 nucleotide sugar dehydrogenase -
  YHS_RS11070 (YHS_12210) mazG 2502339..2503163 (+) 825 WP_100274294.1 nucleoside triphosphate pyrophosphohydrolase -
  YHS_RS11075 (YHS_12215) comEA/comE1 2503364..2503747 (+) 384 WP_100274295.1 ComEA family DNA-binding protein Machinery gene
  YHS_RS11080 (YHS_12220) pcnB 2503984..2506200 (+) 2217 WP_100274296.1 polynucleotide adenylyltransferase PcnB -
  YHS_RS11085 (YHS_12225) folK 2506197..2506691 (+) 495 WP_100274297.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  YHS_RS11090 (YHS_12230) panB 2506899..2507768 (+) 870 WP_100274298.1 3-methyl-2-oxobutanoate hydroxymethyltransferase -

Sequence

Protein


Download         Length: 127 a.a.        Molecular weight: 13680.98 Da        Isoelectric Point: 10.4086

>NTDB_id=211402 YHS_RS11075 WP_100274295.1 2503364..2503747(+) (comEA/comE1) [Moraxella osloensis strain YHS]
MIFRLLFGSIFAILFLALWAVPAQAQVCTPIMTPEQAFLAVTNLTGTNGNTKKPSANLLANSPKVININTASEAELTQLD
GIGAKKAQQIILYRQMIAPFATADDLANVKGIGKATVDKNRHRITTQ

Nucleotide


Download         Length: 384 bp        

>NTDB_id=211402 YHS_RS11075 WP_100274295.1 2503364..2503747(+) (comEA/comE1) [Moraxella osloensis strain YHS]
ATGATTTTTCGATTATTATTTGGCTCAATTTTTGCCATTTTATTTCTAGCACTATGGGCAGTGCCCGCACAGGCGCAAGT
ATGTACCCCAATCATGACACCCGAGCAGGCTTTTTTAGCCGTGACAAATTTGACGGGGACTAACGGTAATACCAAAAAAC
CCTCTGCAAATCTTCTTGCCAATTCACCCAAAGTGATTAATATCAATACCGCCAGTGAAGCCGAGCTTACACAGCTTGAT
GGTATCGGCGCCAAAAAAGCCCAGCAAATTATTTTATACCGGCAAATGATAGCGCCGTTTGCCACAGCGGATGACCTAGC
CAACGTCAAAGGTATCGGCAAAGCGACTGTCGATAAAAATCGCCACCGCATCACCACCCAATAG

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(65-125)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

38.211

96.85

0.37