Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   YHS_RS07825 Genome accession   NZ_CP024176
Coordinates   1790665..1791117 (-) Length   150 a.a.
NCBI ID   WP_198510413.1    Uniprot ID   -
Organism   Moraxella osloensis strain YHS     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1785665..1796117
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  YHS_RS07810 (YHS_07820) - 1786508..1787773 (-) 1266 WP_099834275.1 exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase -
  YHS_RS07815 (YHS_07825) - 1787773..1789587 (-) 1815 WP_099834276.1 PglL family O-oligosaccharyltransferase -
  YHS_RS07820 (YHS_07830) pilA 1789999..1790454 (+) 456 WP_099834277.1 pilin Machinery gene
  YHS_RS07825 (YHS_07835) comF 1790665..1791117 (-) 453 WP_198510413.1 type IV pilin protein Machinery gene
  YHS_RS07830 (YHS_07840) - 1791111..1791680 (-) 570 WP_320056666.1 type IV pilin protein -

Sequence

Protein


Download         Length: 150 a.a.        Molecular weight: 16444.70 Da        Isoelectric Point: 7.8110

>NTDB_id=211389 YHS_RS07825 WP_198510413.1 1790665..1791117(-) (comF) [Moraxella osloensis strain YHS]
MVMKNRYRQQGFTLIELMIVVAIIGVLAAIAYPSYQHYVIKTKRTDMMAEMQNIASQIESRKLAQGSYTNAGTGLDGSFP
RSGTALYTIALAPTPLTERWTITATPVSSSQMATDGRLTLNAQGLKCRDKNNDGDTQDTGECGMGQEWNN

Nucleotide


Download         Length: 453 bp        

>NTDB_id=211389 YHS_RS07825 WP_198510413.1 1790665..1791117(-) (comF) [Moraxella osloensis strain YHS]
ATGGTAATGAAAAATCGATATCGCCAACAAGGCTTTACCCTAATCGAGCTGATGATTGTGGTTGCTATTATTGGCGTGCT
GGCGGCGATTGCTTATCCCAGCTATCAGCACTACGTCATCAAGACCAAACGCACTGATATGATGGCAGAAATGCAAAATA
TCGCCTCGCAGATTGAATCGCGTAAACTGGCACAAGGCAGTTACACGAACGCAGGGACGGGATTAGATGGGAGTTTCCCT
AGAAGTGGTACAGCCTTGTATACCATTGCCCTAGCACCCACACCCCTCACTGAACGTTGGACAATTACAGCGACACCTGT
TAGTTCATCGCAGATGGCAACTGATGGTAGACTTACGCTAAACGCGCAAGGGCTCAAATGTCGCGATAAAAATAATGATG
GCGATACGCAAGATACAGGCGAATGTGGTATGGGTCAAGAGTGGAATAACTAG

Domains

Predicted by InterProScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(33-111)

Prokaryotic N-terminal methylation motif (N_methyl)

(8-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baylyi ADP1

48

83.333

0.4
  pilE Acinetobacter baumannii D1279779

47.967

82

0.393
  comE Acinetobacter baylyi ADP1

30.682

100

0.36