Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   YHS_RS01200 Genome accession   NZ_CP024176
Coordinates   265223..265585 (+) Length   120 a.a.
NCBI ID   WP_050324979.1    Uniprot ID   -
Organism   Moraxella osloensis strain YHS     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 260223..270585
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  YHS_RS01190 (YHS_01195) - 262850..264100 (-) 1251 WP_198510456.1 efflux RND transporter periplasmic adaptor subunit -
  YHS_RS01195 (YHS_01200) pilG 264590..264976 (+) 387 WP_050324978.1 twitching motility response regulator PilG Regulator
  YHS_RS01200 (YHS_01205) pilH 265223..265585 (+) 363 WP_050324979.1 response regulator Machinery gene
  YHS_RS01205 (YHS_01210) - 265591..266127 (+) 537 WP_065254123.1 chemotaxis protein CheW -
  YHS_RS01210 (YHS_01215) - 266547..267581 (+) 1035 Protein_231 methyl-accepting chemotaxis protein -
  YHS_RS12545 - 267678..267935 (+) 258 WP_157796993.1 CheR family methyltransferase -

Sequence

Protein


Download         Length: 120 a.a.        Molecular weight: 13603.69 Da        Isoelectric Point: 5.6153

>NTDB_id=211364 YHS_RS01200 WP_050324979.1 265223..265585(+) (pilH) [Moraxella osloensis strain YHS]
MAKILVVDDSPSEMAKFRDILTRHQHEVIEAHTGEDGIQKANEFFPDVILMDVVMPEMNGFQATRKLTRDPKTSHIPVII
ISTKNQEADRVWGKRQGARDYLSKPITEEALITVICAVME

Nucleotide


Download         Length: 363 bp        

>NTDB_id=211364 YHS_RS01200 WP_050324979.1 265223..265585(+) (pilH) [Moraxella osloensis strain YHS]
ATGGCCAAAATCTTAGTAGTTGATGATTCACCATCAGAAATGGCAAAATTTCGAGATATTTTGACTCGTCATCAGCACGA
AGTCATTGAAGCGCATACAGGCGAGGATGGAATTCAAAAAGCCAATGAGTTTTTCCCAGATGTGATTTTGATGGATGTGG
TCATGCCAGAGATGAACGGCTTTCAAGCAACCCGCAAACTTACCCGTGACCCAAAAACCAGTCATATCCCTGTCATCATC
ATCAGTACTAAAAATCAAGAAGCTGACCGCGTCTGGGGCAAGCGCCAAGGCGCACGGGATTATCTCAGCAAGCCGATTAC
AGAAGAAGCCTTAATCACTGTAATCTGCGCCGTGATGGAGTAG

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

40.87

95.833

0.392