Detailed information    

insolico Bioinformatically predicted

Overview

Name   tsaP   Type   Machinery gene
Locus tag   YHS_RS00085 Genome accession   NZ_CP024176
Coordinates   20026..21129 (+) Length   367 a.a.
NCBI ID   WP_099833306.1    Uniprot ID   -
Organism   Moraxella osloensis strain YHS     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 15026..26129
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  YHS_RS12760 - 16897..17160 (-) 264 WP_264754950.1 glutaredoxin domain-containing protein -
  YHS_RS12765 - 17167..17559 (-) 393 Protein_14 peroxiredoxin -
  YHS_RS00070 (YHS_00070) - 17923..18411 (+) 489 WP_050326051.1 YajQ family cyclic di-GMP-binding protein -
  YHS_RS00075 (YHS_00075) hisB 18489..19091 (-) 603 WP_007117432.1 imidazoleglycerol-phosphate dehydratase HisB -
  YHS_RS00080 (YHS_00080) def 19114..19644 (-) 531 WP_099833305.1 peptide deformylase -
  YHS_RS00085 (YHS_00085) tsaP 20026..21129 (+) 1104 WP_099833306.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  YHS_RS00090 (YHS_00090) dprA 21299..22528 (+) 1230 WP_099833307.1 DNA-processing protein DprA Machinery gene
  YHS_RS00095 (YHS_00095) - 22578..23183 (+) 606 WP_099833308.1 L-threonylcarbamoyladenylate synthase -
  YHS_RS00100 (YHS_00100) grpE 23407..23988 (+) 582 WP_065253958.1 nucleotide exchange factor GrpE -
  YHS_RS00105 (YHS_00105) dnaK 24150..26072 (+) 1923 WP_060994956.1 molecular chaperone DnaK -

Sequence

Protein


Download         Length: 367 a.a.        Molecular weight: 39524.45 Da        Isoelectric Point: 9.2155

>NTDB_id=211353 YHS_RS00085 WP_099833306.1 20026..21129(+) (tsaP) [Moraxella osloensis strain YHS]
MTNYNTTTMKKLSFALLATLGMTVTSVAAANNPPPRIKADAPNRYVVKKGDTLWDISGKFLESPWRWKEIWATNKQIRNP
HLIYPKDVIILCVIKGQKLVGVDTGEGCAGIEKAMSAPTTTTTVVSAAGSIPAIPLTAIETWLERNIIVSPDDFKNTPYV
LASKDKNIITGVGNKIYAKGVPLIVGQRYGVYREGEPYVDPTTRKVIGLEVTQVAAGIVTSVASNGVSSIELKKSYGQEV
REGDRVFVEVGQYLPPAFYPKPASVTRGGRVIRILNSISSAGRDGVIAINLGTSQGAEPGDVLTVYQKGALVLDDYASVK
GGAVRLPSEQIGHVMVFKAFNDISYAYVLDAESPIHEQDFLLPAVGN

Nucleotide


Download         Length: 1104 bp        

>NTDB_id=211353 YHS_RS00085 WP_099833306.1 20026..21129(+) (tsaP) [Moraxella osloensis strain YHS]
ATGACAAACTATAACACCACGACAATGAAAAAATTATCCTTCGCTTTGTTGGCAACCTTAGGTATGACAGTGACTTCAGT
GGCTGCTGCTAACAACCCGCCGCCTCGTATCAAAGCCGATGCGCCCAACCGTTACGTGGTAAAAAAAGGTGATACGCTTT
GGGATATCTCCGGCAAATTCTTAGAAAGTCCGTGGCGCTGGAAAGAAATCTGGGCGACCAATAAGCAGATTCGTAATCCG
CATCTGATTTATCCAAAAGATGTGATTATCTTATGTGTGATTAAAGGGCAAAAATTGGTCGGTGTAGACACGGGGGAAGG
CTGTGCAGGCATTGAAAAAGCCATGAGCGCGCCAACCACTACAACCACGGTGGTGAGTGCCGCAGGTAGTATCCCTGCGA
TTCCTTTGACTGCCATTGAAACTTGGCTTGAGCGCAATATCATCGTATCGCCTGATGATTTTAAAAATACCCCTTATGTG
CTGGCTTCAAAAGATAAAAACATTATCACAGGTGTCGGTAACAAAATCTATGCCAAAGGCGTACCACTCATTGTGGGACA
ACGCTATGGTGTGTATCGTGAGGGCGAACCGTATGTTGACCCAACCACCCGTAAAGTCATCGGTCTTGAAGTCACCCAAG
TTGCCGCAGGTATCGTCACTAGCGTAGCATCAAACGGTGTTTCTAGTATCGAGCTTAAAAAATCGTATGGTCAAGAAGTG
CGCGAAGGTGACCGTGTGTTTGTCGAAGTCGGTCAGTACTTACCACCTGCGTTTTATCCAAAACCTGCCAGCGTTACCCG
TGGCGGTCGCGTGATTCGTATTTTAAACTCAATTAGTAGTGCCGGTCGAGATGGGGTGATTGCCATTAATTTGGGCACCA
GCCAAGGCGCTGAGCCAGGCGATGTGCTGACGGTTTATCAAAAAGGCGCTTTAGTCTTGGACGACTATGCATCCGTGAAA
GGTGGGGCAGTACGGTTGCCAAGTGAGCAAATCGGTCATGTGATGGTATTTAAAGCATTTAACGATATTAGCTACGCTTA
TGTACTCGATGCTGAATCACCGATTCATGAGCAAGATTTTTTATTGCCTGCGGTCGGCAACTAA

Domains

Predicted by InterProScan.

LysM domain (LysM)

(45-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tsaP Acinetobacter baumannii D1279779

42.935

100

0.431