Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   NGO_RS00260 Genome accession   NC_002946
Coordinates   52527..55670 (-) Length   1047 a.a.
NCBI ID   WP_010950983.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae FA 1090     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 47527..60670
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NGO_RS00245 (NGO0050) - 49539..49928 (-) 390 WP_003687278.1 endonuclease domain-containing protein -
  NGO_RS11520 - 50091..50258 (-) 168 WP_003687280.1 glyoxalase -
  NGO_RS00250 (NGO0050a) - 50186..50470 (-) 285 WP_003687282.1 VOC family protein -
  NGO_RS00255 (NGO0053) carA 50524..51657 (-) 1134 WP_010950981.1 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit -
  NGO_RS00260 (NGO0055) pilC 52527..55670 (-) 3144 WP_010950983.1 PilC family type IV pilus tip adhesin Machinery gene
  NGO_RS00265 (NGO0056) apbC 57122..58201 (-) 1080 WP_010950984.1 iron-sulfur cluster carrier protein ApbC -
  NGO_RS00275 (NGO0057) - 58575..59084 (+) 510 WP_003687293.1 protein disulfide oxidoreductase -
  NGO_RS00280 (NGO0058) nadR 59425..59865 (+) 441 WP_003687296.1 MarR family adhesin repressor NadR -
  NGO_RS00285 (NGO0059) hpaC 59981..60481 (+) 501 WP_003687298.1 4-hydroxyphenylacetate 3-monooxygenase, reductase component -

Sequence

Protein


Download         Length: 1047 a.a.        Molecular weight: 115038.02 Da        Isoelectric Point: 9.7905

>NTDB_id=21132 NGO_RS00260 WP_010950983.1 52527..55670(-) (pilC) [Neisseria gonorrhoeae FA 1090]
MNKTLKRRVFRHTALYAAILMFSHTGGGGGAQAQTQTRKYAIIMDERNQPEVKWEGSYSTLREKDGERKFIYTNQRNKLN
QQNNFISFDNTDTLVSRQSGTAVFGTATYLPPYGKVSGFDTAELNKRGNAVNWIHTTRAGLAGYVYTGVICRDTGQCPQL
VYKTRFSFDNTGLAKNTGRLDRHTEPSRENSPIYKLSDYPWLGVSFNLGSEGTAKDGRSSNKLVSSFDENNSNSNQNLVY
TTEGHRISLGDWQRESTAMAYYLNAKLHLLDKQRIENIAPGKTVDLGTLRPRVETKTNNWGNLLSFWATWKIEDKGNITV
RLGLPEVKAGRCTNTAHPNPNAKAPSPALTAPALWFGPVQNGKVQMYSASVSTYPGSSSSRIFLQELKTRTDPARPGRHS
LAALDTQNIKSREPNFNSRQTVIRLPGGVYKINSGKNGGRVAGINGNDGKNDTFGIYKDRLVTPEADEWSNILLPWTARY
YGNDDIFKTFNQPNSKTQNGKKQYSQKYRIRTKEDDNDKPRDLGDIVNSPIVAVGGYLATSANDGMVHLFKRNGTDQRGY
ELKLSYIPGTMERKDIEGNDSDLAKELRAFAEKGYVGDRYGVDGGFVLRRITDDQDKQKHFFMFGAMGLGGRGAYALDLS
KIDGNYPAAAPLFDVKNGDNNGKNRVKVELGYTVGTPQIGKTQNGKYAAFLASGYAAKNIGSGDNKTALYVYDLENGSGS
LIKKIEVQGGKGGLSSPTLVDKDLDGTVDIAYAGDRGGNMYRFDLSDSNPDKWSVRTIFEGDKPITSAPAVSRLADKRVV
IFGTGSDLTEDDVLNTGEQYIYGIFDDDKGTVKVTVQNGTGGGLLEQVLKEENKTLFLNKGSDGSGSKGWVVKLKEGQRV
TVKPTVVLRTAFVTIRSYTGNDKCGAQTAILGINTADGGALTPRSARPIVPDNQVAQYSGHQKMNGKSIPIGCMWKNGKT
VCPNGYVYDKPVNVRYLDEKKTDDFPVTADGDAGGSGTFKEGKKPARNNRCFSGKGVRTLLMNDLDSLDITGPMCGIKRL
SWREVFF

Nucleotide


Download         Length: 3144 bp        

>NTDB_id=21132 NGO_RS00260 WP_010950983.1 52527..55670(-) (pilC) [Neisseria gonorrhoeae FA 1090]
ATGAATAAAACTTTAAAAAGGCGGGTTTTCCGCCATACCGCGCTTTATGCCGCCATCTTGATGTTTTCCCATACCGGCGG
GGGGGGGGGGGCGCAGGCGCAAACGCAAACCCGTAAATACGCTATTATCATGGACGAACGAAATCAGCCGGAGGTAAAGT
GGGAGGGTTCATATTCAACCTTAAGGGAAAAAGACGGGGAACGCAAATTTATCTATACGAACCAGAGAAACAAGTTGAAC
CAACAAAACAATTTTATCTCATTCGACAATACCGATACCCTTGTTTCCCGACAAAGCGGTACTGCCGTTTTTGGCACAGC
CACCTACCTGCCGCCCTACGGCAAGGTTTCCGGCTTTGATACCGCCGAGCTGAACAAGCGCGGCAATGCCGTCAATTGGA
TTCATACCACCCGGGCCGGGCTGGCAGGCTACGTCTACACCGGCGTCATATGCAGAGACACAGGGCAATGCCCCCAACTT
GTCTATAAAACCCGATTTTCCTTCGACAACACCGGTTTGGCAAAAAATACGGGCAGGCTGGATAGGCACACAGAGCCAAG
CCGCGAAAATTCGCCCATTTACAAATTGTCGGATTATCCTTGGTTGGGCGTGTCTTTCAATTTGGGCAGCGAGGGTACCG
CCAAAGATGGCAGATCATCCAACAAATTGGTATCTTCTTTTGATGAAAACAATAGTAATAGTAATCAAAACCTCGTCTAT
ACGACAGAAGGCCACCGTATTTCCCTTGGCGACTGGCAGCGCGAAAGTACCGCCATGGCCTATTATCTGAACGCCAAACT
GCACCTGCTGGATAAACAACGGATTGAAAATATCGCGCCAGGCAAAACAGTGGATTTGGGCACCTTGAGACCGCGCGTCG
AGACGAAGACAAATAATTGGGGGAATCTGCTAAGTTTTTGGGCTACGTGGAAGATTGAAGATAAAGGGAACATTACAGTC
CGCCTCGGCCTGCCGGAAGTCAAAGCAGGCCGCTGCACCAACACCGCCCACCCCAATCCCAACGCCAAAGCCCCTTCGCC
GGCCCTGACCGCCCCCGCGCTGTGGTTCGGCCCTGTGCAAAATGGCAAGGTGCAGATGTATTCCGCTTCGGTTTCCACCT
ACCCCGGCAGTTCGAGCAGCCGCATCTTCCTCCAAGAGCTGAAAACTCGAACCGACCCCGCCCGGCCCGGCCGGCATTCC
CTCGCCGCTTTGGATACGCAGAACATCAAAAGCCGCGAGCCGAATTTCAACTCAAGGCAGACCGTCATCCGATTGCCGGG
CGGCGTGTACAAGATCAACTCGGGCAAGAACGGCGGCCGGGTCGCGGGTATTAATGGCAATGACGGCAAAAACGACACTT
TCGGCATCTACAAGGACAGGCTCGTCACACCTGAGGCCGACGAGTGGAGCAACATACTGCTGCCTTGGACGGCCCGGTAT
TACGGTAATGACGATATATTTAAAACATTCAACCAACCAAACAGCAAAACACAAAACGGCAAAAAACAATACAGCCAAAA
ATACCGCATCCGCACAAAAGAAGATGACAATGACAAACCCCGCGATTTGGGCGACATCGTCAACAGCCCGATTGTCGCGG
TCGGCGGGTATTTGGCAACTTCTGCCAACGACGGGATGGTGCACCTGTTTAAAAGAAACGGCACAGACCAACGAGGCTAC
GAACTGAAGCTCAGCTACATCCCCGGTACGATGGAGCGTAAGGATATTGAAGGCAATGACTCCGACCTCGCCAAAGAGCT
GCGCGCCTTTGCCGAAAAAGGCTATGTGGGCGACCGCTACGGCGTGGACGGCGGCTTTGTCTTGCGCCGCATTACAGATG
ACCAAGACAAGCAAAAACATTTCTTTATGTTTGGTGCGATGGGCCTTGGCGGCAGAGGCGCGTATGCCTTGGATTTAAGC
AAAATCGACGGAAATTATCCAGCCGCCGCTCCCCTGTTTGATGTCAAAAATGGCGATAATAACGGCAAAAATCGCGTGAA
AGTGGAATTAGGCTACACCGTCGGCACGCCGCAAATCGGCAAAACCCAAAACGGCAAATACGCCGCCTTCCTCGCTTCCG
GTTATGCGGCTAAAAATATTGGCAGCGGCGATAATAAAACCGCGCTGTATGTATATGATTTGGAAAACGGCAGTGGTAGT
CTGATTAAAAAAATCGAAGTGCAGGGCGGCAAGGGCGGGCTTTCGTCCCCCACGCTGGTGGATAAAGATTTGGACGGCAC
GGTCGATATCGCCTATGCCGGCGACCGGGGCGGCAATATGTACCGCTTTGATTTGAGCGATTCCAATCCTGATAAATGGT
CTGTAAGGACTATTTTCGAAGGCGACAAGCCGATTACTTCCGCGCCCGCCGTTTCCCGACTGGCAGACAAACGCGTCGTC
ATCTTCGGTACGGGCAGCGATTTGACCGAAGATGATGTACTGAATACGGGCGAACAATATATTTACGGTATCTTTGACGA
CGATAAGGGGACGGTTAAGGTAACGGTACAAAACGGCACGGGAGGCGGGTTGCTCGAGCAAGTGCTTAAAGAGGAAAATA
AAACATTATTCCTGAACAAGGGATCCGACGGATCGGGCAGTAAGGGGTGGGTAGTGAAGCTGAAGGAAGGACAACGCGTT
ACCGTCAAACCGACCGTGGTATTGCGTACCGCCTTTGTCACCATCCGCAGCTATACGGGTAATGACAAATGCGGCGCACA
AACCGCCATTTTGGGCATCAATACCGCCGACGGCGGCGCATTGACTCCGAGAAGCGCGCGCCCGATTGTGCCGGATAACC
AGGTTGCGCAATATTCCGGCCATCAGAAAATGAACGGCAAGTCCATCCCCATAGGCTGCATGTGGAAAAACGGCAAAACC
GTCTGCCCGAACGGATATGTTTACGACAAACCGGTTAATGTGCGTTACCTGGACGAAAAGAAAACAGACGATTTCCCCGT
CACGGCAGACGGTGATGCAGGCGGCAGCGGAACATTCAAAGAGGGTAAAAAACCCGCCCGCAATAACCGGTGCTTCTCCG
GAAAAGGTGTGCGCACCCTGCTGATGAACGATTTGGACAGCTTGGATATTACCGGCCCGATGTGCGGTATCAAACGCTTA
AGCTGGCGCGAAGTCTTCTTCTGA

Domains

Predicted by InterproScan.

Neisseria PilC beta-propeller domain (T4P_PilY1)

(523-858)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Neisseria meningitidis A1493

73.39

100

0.74

Multiple sequence alignment