Detailed information    

insolico Bioinformatically predicted

Overview

Name   tsaP   Type   Machinery gene
Locus tag   AHTJS_RS15955 Genome accession   NZ_CP018871
Coordinates   3253911..3255062 (+) Length   383 a.a.
NCBI ID   WP_005085668.1    Uniprot ID   -
Organism   Acinetobacter haemolyticus strain TJS01     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3248911..3260062
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AHTJS_RS15935 (AHTJS_15920) - 3249809..3250567 (+) 759 WP_017394896.1 hypothetical protein -
  AHTJS_RS15940 (AHTJS_15925) - 3250612..3252723 (-) 2112 WP_075316374.1 TonB-dependent receptor domain-containing protein -
  AHTJS_RS15945 (AHTJS_15930) - 3252797..3253234 (-) 438 WP_004637503.1 DUF2946 family protein -
  AHTJS_RS15950 (AHTJS_15935) def 3253255..3253785 (-) 531 WP_004637502.1 peptide deformylase -
  AHTJS_RS15955 (AHTJS_15940) tsaP 3253911..3255062 (+) 1152 WP_005085668.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  AHTJS_RS15960 (AHTJS_15945) dprA 3255074..3256204 (+) 1131 WP_075316375.1 DNA-processing protein DprA Machinery gene
  AHTJS_RS15965 (AHTJS_15950) - 3256242..3256811 (+) 570 WP_005085670.1 Sua5/YciO/YrdC/YwlC family protein -
  AHTJS_RS15970 (AHTJS_15955) - 3257186..3258106 (-) 921 WP_075316376.1 DMT family transporter -
  AHTJS_RS15975 (AHTJS_15960) - 3258209..3258856 (-) 648 WP_075316377.1 TetR/AcrR family transcriptional regulator -

Sequence

Protein


Download         Length: 383 a.a.        Molecular weight: 41744.88 Da        Isoelectric Point: 9.4256

>NTDB_id=211184 AHTJS_RS15955 WP_005085668.1 3253911..3255062(+) (tsaP) [Acinetobacter haemolyticus strain TJS01]
MKKVLNGIQSFHALGLKKQLIAAAICAGLGMSVNLAHAASPNVSPPSVKVGAPHVYVVKKGDTLWDISGKFLSKPWRWPE
IWASNKHVKNPHWIYPGDRLLLCSLNGKPLVGKDEGDGCAGIIRRYTGNTSTLRPQVRVEALNNSIPVIPLAHIQQWLER
TSVLPADAIAHTPYILGTADQRVLAGKGQRVYVRGNGIENGQRYGVFREGEPYTILDEHGKKHILGVELTQVASGVAIST
EKDITTVELTDSYNGEVRRGDRVMPEQDAMLPTLFYPTDANQVTDGGKIIRVMGSIGTAAKNGVVTVDRGTADGIEIGQV
FNAYQDGETVKDPKTKENVKLPGQYVGSVMIFKSFDRISYAYVLESELPIKMGSSIKPPRLDN

Nucleotide


Download         Length: 1152 bp        

>NTDB_id=211184 AHTJS_RS15955 WP_005085668.1 3253911..3255062(+) (tsaP) [Acinetobacter haemolyticus strain TJS01]
ATGAAAAAGGTTTTAAACGGCATACAATCATTTCATGCCTTGGGGTTAAAAAAACAACTGATTGCCGCTGCAATATGTGC
AGGACTAGGCATGAGTGTCAATCTTGCACATGCTGCAAGTCCGAACGTTAGTCCACCCTCAGTAAAAGTGGGTGCACCAC
ACGTTTATGTGGTCAAAAAAGGCGATACGCTTTGGGACATTTCAGGTAAGTTTTTAAGCAAGCCTTGGCGTTGGCCTGAG
ATTTGGGCAAGCAATAAACACGTTAAAAACCCACATTGGATCTATCCAGGCGATCGCTTATTGCTTTGTAGTTTGAATGG
CAAACCATTGGTGGGTAAAGATGAGGGAGATGGCTGTGCGGGTATTATTCGCCGTTATACAGGCAACACCTCAACATTAC
GCCCACAGGTGCGTGTCGAAGCACTCAACAATAGCATTCCAGTTATTCCACTGGCGCACATTCAACAATGGCTAGAGCGT
ACTTCGGTTCTTCCAGCTGATGCAATTGCGCATACACCTTATATCTTAGGTACAGCCGATCAACGTGTACTCGCTGGTAA
AGGTCAACGTGTTTATGTCCGCGGTAACGGCATTGAAAATGGTCAACGCTATGGCGTATTCCGTGAAGGTGAACCGTACA
CCATCCTTGATGAACATGGTAAAAAGCACATTCTTGGCGTTGAATTGACCCAAGTTGCTTCAGGTGTTGCTATTAGCACT
GAAAAGGATATTACCACGGTTGAGTTAACCGATAGTTATAACGGTGAAGTTCGTCGTGGTGATCGTGTCATGCCTGAACA
AGATGCCATGTTACCAACATTGTTCTACCCAACCGATGCAAATCAAGTCACTGATGGTGGTAAAATCATTCGTGTCATGG
GTTCAATTGGTACAGCCGCTAAAAATGGTGTTGTCACCGTCGATCGTGGTACAGCTGATGGGATCGAAATCGGACAAGTA
TTTAATGCTTATCAAGACGGTGAAACAGTTAAAGATCCGAAAACGAAAGAAAATGTCAAATTACCAGGACAGTATGTAGG
TAGTGTGATGATCTTTAAGAGCTTTGACCGTATCAGCTATGCGTATGTGCTTGAAAGTGAGTTACCAATAAAAATGGGCT
CAAGTATCAAACCACCTCGTTTAGATAACTAA

Domains

Predicted by InterproScan.

LysM domain (LysM)

(56-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tsaP Acinetobacter baumannii D1279779

72.396

100

0.726

Multiple sequence alignment