Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   AHTJS_RS15170 Genome accession   NZ_CP018871
Coordinates   3087108..3087434 (-) Length   108 a.a.
NCBI ID   WP_004637627.1    Uniprot ID   -
Organism   Acinetobacter haemolyticus strain TJS01     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3082108..3092434
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AHTJS_RS15150 (AHTJS_15135) - 3082412..3083020 (-) 609 WP_035374895.1 FHA domain-containing protein -
  AHTJS_RS15155 (AHTJS_15140) gspD 3083099..3085309 (-) 2211 WP_005087946.1 type II secretion system secretin GspD -
  AHTJS_RS15160 (AHTJS_15145) - 3085351..3086190 (-) 840 WP_005087945.1 type II secretion system protein N -
  AHTJS_RS15165 (AHTJS_15150) gspN 3086190..3086933 (-) 744 WP_075316541.1 type II secretion system protein N -
  AHTJS_RS15170 (AHTJS_15155) hns 3087108..3087434 (-) 327 WP_004637627.1 H-NS family nucleoid-associated regulatory protein Regulator
  AHTJS_RS15175 (AHTJS_15160) - 3087862..3088293 (-) 432 WP_005083921.1 acyl-CoA thioesterase -
  AHTJS_RS15180 (AHTJS_15165) - 3088302..3089495 (-) 1194 WP_005087942.1 hypothetical protein -
  AHTJS_RS15185 (AHTJS_15170) - 3089501..3090325 (-) 825 WP_075316325.1 hypothetical protein -
  AHTJS_RS15190 (AHTJS_15175) - 3090322..3091098 (-) 777 WP_005087939.1 uroporphyrinogen-III synthase -
  AHTJS_RS15195 (AHTJS_15180) hemC 3091098..3092015 (-) 918 WP_005087936.1 hydroxymethylbilane synthase -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12251.93 Da        Isoelectric Point: 5.0269

>NTDB_id=211180 AHTJS_RS15170 WP_004637627.1 3087108..3087434(-) (hns) [Acinetobacter haemolyticus strain TJS01]
MKPDISDLSVEDLKRLQAEAEALIESKKDQAIEDAYNQIIAIADGIGLSVEELLAVGEQKRKKTTRKAVEPRYRNKNNTE
ETWTGRGKQPRWLVAELEKGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=211180 AHTJS_RS15170 WP_004637627.1 3087108..3087434(-) (hns) [Acinetobacter haemolyticus strain TJS01]
ATGAAACCAGATATTAGTGATTTATCAGTTGAAGATTTAAAGCGTTTGCAAGCAGAAGCTGAAGCTTTAATTGAAAGTAA
AAAAGACCAAGCAATTGAAGATGCATATAATCAAATCATAGCAATTGCTGATGGTATTGGTTTAAGCGTTGAAGAGTTAT
TGGCTGTAGGTGAGCAAAAGCGTAAAAAGACTACGCGTAAAGCTGTAGAACCACGCTATCGCAATAAAAATAATACTGAA
GAAACTTGGACTGGTCGTGGTAAACAGCCGCGTTGGTTGGTTGCTGAATTAGAAAAAGGCGCAAAACTTGAAGATTTCTT
AATCTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(13-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

85.185

100

0.852

Multiple sequence alignment