Detailed information    

insolico Bioinformatically predicted

Overview

Name   priA   Type   Machinery gene
Locus tag   AHTJS_RS14645 Genome accession   NZ_CP018871
Coordinates   2966911..2969136 (+) Length   741 a.a.
NCBI ID   WP_075316536.1    Uniprot ID   -
Organism   Acinetobacter haemolyticus strain TJS01     
Function   DNA puliing through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2961911..2974136
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AHTJS_RS14625 (AHTJS_14610) lnt 2962673..2964232 (+) 1560 WP_075316283.1 apolipoprotein N-acyltransferase -
  AHTJS_RS14630 (AHTJS_14615) - 2964320..2964664 (-) 345 WP_075316284.1 hypothetical protein -
  AHTJS_RS14635 (AHTJS_14620) gspG 2964928..2965557 (-) 630 WP_004637734.1 type II secretion system major pseudopilin GspG -
  AHTJS_RS14640 (AHTJS_14625) gspF 2965557..2966762 (-) 1206 WP_075316285.1 type II secretion system inner membrane protein GspF -
  AHTJS_RS14645 (AHTJS_14630) priA 2966911..2969136 (+) 2226 WP_075316536.1 primosomal protein N' Machinery gene
  AHTJS_RS14650 (AHTJS_14635) - 2969177..2970994 (+) 1818 WP_075316286.1 cation:proton antiporter -
  AHTJS_RS14655 (AHTJS_14640) hslO 2971103..2971978 (+) 876 WP_075316287.1 Hsp33 family molecular chaperone HslO -
  AHTJS_RS14660 (AHTJS_14645) - 2972088..2972438 (-) 351 WP_075316288.1 hypothetical protein -
  AHTJS_RS14665 (AHTJS_14650) - 2972602..2973564 (+) 963 WP_075316289.1 DnaJ C-terminal domain-containing protein -
  AHTJS_RS14670 (AHTJS_14655) - 2973576..2973902 (+) 327 WP_075316290.1 chaperone modulator CbpM -

Sequence

Protein


Download         Length: 741 a.a.        Molecular weight: 84190.22 Da        Isoelectric Point: 8.6574

>NTDB_id=211176 AHTJS_RS14645 WP_075316536.1 2966911..2969136(+) (priA) [Acinetobacter haemolyticus strain TJS01]
MPSENSNAILYRIRVALPVYVYDTFDYTVSAEQYQQAQIGARVAVSFGRQNLVGIIVEKIDPNQVFTGQFKLKAITELLD
KEAILDQHVLTLMTWSAQYYQFPIGEVMQSALPTLLRQGRALDILFHLWKIVPNDDPNALLKRSPKQYEAYQILKIHPHG
TTENVLNLSGVETATLKALEKKGLVECCLEPHDFSPSPVQLAQVPLTANEDQKTAIQQILKAQHHYQAFLLDGLTGSGKT
EVYLQVMHEVLKQGKQVLVLVPEIGLTPQTVARFKSRFHCDIALLHSGLNDSKRLQAWQHAQTGKASIVIGTRSAIYTPL
PHLGLIILDEEHDLSYKQQEGFRYHTRDVALYRGYLQHCPVILGSATPSIDSYHLVESGKLHLLELNQRAGIAVLPKMHV
IDLKIAKKKHGISQNLIEQIKLTLERKEQVLIFLNRRGYAPILMCESCGWQANCPHCDAHFTLHSQPYHYLHCHHCGTIN
RLPDHCPACQKQSLKTIGAGTAKLEEHLQELFPHNEVVRVDRDSTSRVGSWQKIYDRIQQNKPSILLGTQMLAKGHHFPH
VTLVAILDIDAGLLSVDIRAPERTAQLIVQVAGRAGRGEHKGNVYLQSLRPDHPMLTTLIEHDYRTVAKQMLAERKLAML
PPYRYTVLVRVESKDREYSQHFLADIAQQLRTMAGDLVDIWGPIPAPMERKAGRYRAHMVILSADRAKLHFYLRQWWQQV
VHLPRQHQLRLSIDVDPQEFS

Nucleotide


Download         Length: 2226 bp        

>NTDB_id=211176 AHTJS_RS14645 WP_075316536.1 2966911..2969136(+) (priA) [Acinetobacter haemolyticus strain TJS01]
ATGCCTAGCGAAAATTCTAACGCCATTTTGTACCGTATTCGAGTTGCCCTACCCGTATATGTGTATGACACGTTTGACTA
TACGGTCAGTGCCGAACAGTATCAACAAGCACAGATTGGAGCGCGTGTTGCAGTGTCGTTCGGACGACAAAATCTCGTAG
GTATCATTGTTGAAAAAATTGATCCTAATCAAGTTTTCACAGGTCAATTTAAACTGAAAGCAATTACTGAATTACTTGAT
AAAGAAGCAATATTAGATCAACACGTTTTAACTTTGATGACATGGTCTGCCCAGTACTATCAATTCCCAATTGGCGAAGT
GATGCAAAGTGCCCTCCCCACACTACTCAGACAAGGGCGTGCATTAGACATTTTATTTCATCTGTGGAAAATCGTGCCAA
ATGATGATCCGAATGCATTATTGAAACGCTCTCCAAAACAATATGAGGCGTATCAAATCTTAAAAATACATCCTCATGGC
ACAACTGAAAATGTCTTGAACCTCAGTGGTGTTGAAACTGCAACACTGAAAGCTTTAGAAAAGAAAGGGTTGGTTGAGTG
TTGTCTGGAACCGCATGATTTTAGCCCCTCGCCTGTACAATTGGCGCAGGTACCACTCACAGCCAACGAGGATCAAAAAA
CAGCGATTCAACAAATTCTCAAAGCACAACATCATTACCAAGCATTTTTACTAGATGGCTTAACAGGCAGTGGCAAAACT
GAAGTTTATCTGCAAGTCATGCATGAAGTATTAAAGCAGGGTAAACAGGTGTTGGTACTGGTTCCGGAAATCGGTCTTAC
CCCTCAAACTGTCGCTCGCTTTAAATCACGGTTTCATTGTGATATTGCTTTATTACATTCAGGTTTAAATGACTCGAAGC
GCTTACAAGCATGGCAACACGCACAAACAGGAAAAGCTTCGATTGTGATCGGGACTCGTTCTGCGATCTACACGCCGCTT
CCTCATCTCGGACTGATTATCCTCGATGAAGAGCATGATCTTTCTTATAAACAGCAAGAAGGCTTTCGGTATCATACCCG
TGATGTAGCGCTCTACAGAGGATACTTACAACATTGTCCTGTGATTCTTGGATCTGCAACACCGAGTATCGATAGCTATC
ATCTCGTTGAGTCAGGCAAACTACATCTACTGGAACTCAATCAACGTGCTGGGATCGCTGTGTTACCGAAAATGCATGTG
ATTGATTTAAAAATTGCCAAGAAAAAACATGGTATCAGCCAAAATTTAATTGAGCAGATCAAACTCACCTTAGAACGCAA
AGAACAGGTGTTGATCTTTCTCAACCGTCGGGGTTATGCACCGATTCTGATGTGTGAAAGTTGTGGTTGGCAAGCCAATT
GCCCCCATTGTGATGCGCATTTCACCCTTCATTCTCAGCCTTATCATTATTTACATTGTCATCATTGCGGCACCATCAAT
CGCCTCCCCGATCATTGCCCAGCATGCCAGAAACAAAGTTTAAAAACGATTGGTGCTGGAACGGCAAAGCTTGAAGAGCA
TTTACAAGAGTTATTTCCTCATAATGAAGTGGTTCGAGTTGATCGTGACAGTACCAGCCGCGTCGGAAGTTGGCAGAAAA
TTTATGACCGTATCCAACAAAATAAACCGAGTATTTTATTGGGCACACAAATGCTTGCTAAAGGGCATCATTTTCCACAT
GTGACCTTAGTGGCTATTTTAGATATTGACGCTGGTTTACTGAGCGTGGATATCCGCGCCCCTGAACGTACCGCACAATT
AATAGTACAAGTGGCCGGACGCGCAGGACGAGGCGAACATAAAGGGAATGTCTATTTACAAAGTCTTCGCCCTGATCATC
CTATGCTCACCACATTAATTGAACATGACTATCGTACGGTTGCCAAACAAATGCTGGCTGAGCGTAAACTTGCAATGCTC
CCTCCGTATCGTTATACAGTATTGGTACGTGTGGAGTCGAAAGATCGAGAATATAGCCAGCACTTTTTGGCGGATATTGC
GCAACAACTGAGAACAATGGCTGGCGATTTAGTTGATATTTGGGGGCCAATTCCCGCACCAATGGAACGTAAAGCTGGAC
GTTATCGTGCCCACATGGTGATTTTGTCGGCCGATCGCGCCAAACTGCATTTTTATTTGCGTCAATGGTGGCAACAAGTG
GTACATTTACCTCGTCAGCACCAACTCAGGCTATCCATCGATGTTGATCCACAAGAATTTAGTTAG

Domains

Predicted by InterproScan.

3DNA-binding domain (3BD) (PriA_3primeBD)

(14-113)

Primosomal protein N C-terminal domain (PriA_C)

(642-737)

DEAD/DEAH box helicase (DEAD)

(210-371)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  priA Acinetobacter baumannii D1279779

82.449

99.19

0.818

Multiple sequence alignment