Detailed information    

insolico Bioinformatically predicted

Overview


Name   ceuB   Type   Machinery gene
Locus tag   AHTJS_RS09375 Genome accession   NZ_CP018871
Coordinates   1901048..1902001 (-) Length   317 a.a.
NCBI ID   WP_075315730.1    Uniprot ID   -
Organism   Acinetobacter haemolyticus strain TJS01     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 1896048..1907001
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AHTJS_RS09350 (AHTJS_09335) - 1896096..1896887 (-) 792 WP_197684825.1 DUF4198 domain-containing protein -
  AHTJS_RS09355 (AHTJS_09340) - 1897118..1898338 (+) 1221 WP_075315727.1 MFS transporter -
  AHTJS_RS09360 (AHTJS_09345) - 1898384..1899334 (-) 951 WP_075315728.1 siderophore ABC transporter substrate-binding protein -
  AHTJS_RS09365 (AHTJS_09350) - 1899344..1900108 (-) 765 WP_004638654.1 ABC transporter ATP-binding protein -
  AHTJS_RS09370 (AHTJS_09355) - 1900099..1901055 (-) 957 WP_075315729.1 iron chelate uptake ABC transporter family permease subunit -
  AHTJS_RS09375 (AHTJS_09360) ceuB 1901048..1902001 (-) 954 WP_075315730.1 ABC transporter permease Machinery gene
  AHTJS_RS09380 (AHTJS_09365) - 1902320..1902937 (-) 618 WP_075315731.1 LysE family translocator -
  AHTJS_RS09385 (AHTJS_09370) - 1903094..1903489 (-) 396 Protein_1802 IS3 family transposase -
  AHTJS_RS09395 (AHTJS_09380) istB 1903565..1904338 (-) 774 WP_075314326.1 IS21-like element ISAba8 family helper ATPase IstB -
  AHTJS_RS09400 (AHTJS_09385) istA 1904338..1905357 (-) 1020 WP_075314324.1 IS21 family transposase -
  AHTJS_RS17505 - 1905446..1906218 (-) 773 Protein_1805 IS3 family transposase -
  AHTJS_RS09415 (AHTJS_09400) - 1906372..1906953 (-) 582 WP_075315732.1 hypothetical protein -

Sequence


Protein


Download         Length: 317 a.a.        Molecular weight: 34529.63 Da        Isoelectric Point: 9.4658

>NTDB_id=211170 AHTJS_RS09375 WP_075315730.1 1901048..1902001(-) (ceuB) [Acinetobacter haemolyticus strain TJS01]
MIKRRYLLVLLIPLALISLFVGVGDMSLEGLIAGNPQDWQLFWTSRLPRLMAIVVAGAGLSVCGLIMQSLSRNRFVSPTT
AGLYDCARLGVLISIILLPSASIFAKTGFAIIVTLIGAMTFMSILATLKHRDTVFVPLVGMIFGSIISAFTTFIALQLDL
LQNLAGWLQGDFSTILNGQYELIYLSIPVLALIYIFANRFVLAGLGEDFATNLGLNYKQTLFLGLLLVSVITGVVIVTVG
AIPFLGLIVPNLVSLYLGDHIRKTLSHTALLGALLVLLCDVFGRVVIYPYEVSVSLIMGVVGSVIFLWLLLRRYRYA

Nucleotide


Download         Length: 954 bp        

>NTDB_id=211170 AHTJS_RS09375 WP_075315730.1 1901048..1902001(-) (ceuB) [Acinetobacter haemolyticus strain TJS01]
ATGATTAAACGGCGCTATTTACTGGTTTTACTCATACCTTTGGCATTGATTTCCTTGTTTGTTGGTGTAGGGGATATGAG
TCTTGAAGGATTGATTGCAGGAAATCCACAAGATTGGCAACTCTTTTGGACGAGTCGATTACCACGCCTGATGGCGATTG
TTGTTGCAGGTGCTGGGTTAAGTGTCTGCGGTTTAATTATGCAGTCATTAAGTCGAAATCGCTTTGTTTCACCAACCACA
GCGGGTTTATATGACTGTGCACGGCTGGGCGTTTTAATTTCGATTATTTTGCTTCCAAGTGCTTCTATTTTTGCCAAAAC
TGGATTTGCGATTATTGTCACGCTGATTGGTGCGATGACATTTATGAGTATTCTTGCCACTTTAAAGCACCGAGATACGG
TATTTGTGCCACTCGTTGGGATGATTTTTGGCAGCATTATTTCTGCATTTACGACTTTTATTGCTTTGCAACTTGATTTG
TTGCAGAACTTAGCAGGGTGGTTGCAAGGGGATTTCTCAACCATTTTGAATGGTCAATATGAATTGATTTATTTAAGTAT
TCCCGTTCTTGCATTGATTTATATATTTGCCAATCGTTTTGTCTTGGCAGGCTTGGGTGAAGACTTTGCGACAAATCTAG
GTTTGAACTATAAACAGACACTTTTCTTAGGTCTGCTGCTGGTCTCAGTGATTACTGGTGTGGTGATTGTGACTGTCGGT
GCAATTCCTTTTCTCGGTTTAATTGTGCCAAATCTAGTCAGCCTTTATTTAGGTGATCATATTCGCAAGACGCTTTCACA
TACGGCACTGCTTGGTGCATTGCTGGTCTTACTGTGTGATGTTTTTGGTCGAGTGGTGATTTATCCGTATGAGGTTTCGG
TCAGCCTGATTATGGGGGTGGTTGGTAGTGTGATTTTCCTGTGGTTATTACTCAGGAGATATCGTTATGCATAA

Domains


Predicted by InterproScan.

(11-312)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

49.521

98.738

0.489


Multiple sequence alignment