Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   CR539_RS16865 Genome accession   NZ_CP024147
Coordinates   3241428..3241904 (+) Length   158 a.a.
NCBI ID   WP_158302274.1    Uniprot ID   -
Organism   Escherichia coli strain 14EC033     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3236428..3246904
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CR539_RS16820 (CR539_16760) - 3236633..3236838 (-) 206 Protein_3058 hypothetical protein -
  CR539_RS28645 - 3236837..3236950 (+) 114 Protein_3059 alkaline phosphatase -
  CR539_RS16835 (CR539_16775) - 3237463..3238691 (+) 1229 WP_088895425.1 IS3-like element IS2 family transposase -
  CR539_RS28650 - 3238616..3238849 (-) 234 Protein_3061 hypothetical protein -
  CR539_RS16845 (CR539_16785) - 3238828..3239073 (+) 246 Protein_3062 transposase -
  CR539_RS16850 (CR539_16790) - 3239141..3240292 (+) 1152 WP_024176232.1 IS30-like element IS30 family transposase -
  CR539_RS16855 (CR539_16795) - 3240302..3241207 (+) 906 Protein_3064 IS3-like element IS911 family transposase -
  CR539_RS16860 (CR539_16800) - 3241211..3241366 (+) 156 Protein_3065 peptidase S16 -
  CR539_RS16865 (CR539_16805) radC 3241428..3241904 (+) 477 WP_158302274.1 RadC family protein Machinery gene
  CR539_RS16870 (CR539_16810) - 3241967..3242188 (+) 222 WP_000692323.1 DUF987 domain-containing protein -
  CR539_RS16875 (CR539_16815) - 3242262..3242654 (+) 393 WP_199560496.1 type IV toxin-antitoxin system YeeU family antitoxin -
  CR539_RS16880 (CR539_16820) dsdC 3242848..3243783 (-) 936 WP_032281377.1 DNA-binding transcriptional regulator DsdC -
  CR539_RS16885 (CR539_16825) dsdX 3244001..3245338 (+) 1338 WP_032281365.1 D-serine transporter DsdX -
  CR539_RS16890 (CR539_16830) dsdA 3245356..3246684 (+) 1329 WP_101969482.1 D-serine ammonia-lyase -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17571.18 Da        Isoelectric Point: 7.2017

>NTDB_id=211160 CR539_RS16865 WP_158302274.1 3241428..3241904(+) (radC) [Escherichia coli strain 14EC033]
MQQLSFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLERAEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITEPLVQALGLVDIRVPDHLIVGGNQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=211160 CR539_RS16865 WP_158302274.1 3241428..3241904(+) (radC) [Escherichia coli strain 14EC033]
ATGCAACAACTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGCAGAATTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTACTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCCAGTAAGGCAGACCGGCTTATCACCGAACCTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAACCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

53.982

71.519

0.386