Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   LA20249_RS10985 Genome accession   NZ_CP018867
Coordinates   2285929..2287302 (+) Length   457 a.a.
NCBI ID   WP_057739147.1    Uniprot ID   A0A2K9HLI3
Organism   Companilactobacillus alimentarius DSM 20249     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2280929..2292302
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LA20249_RS10965 (LA20249_10950) - 2282885..2284228 (-) 1344 WP_057739108.1 aminopeptidase C -
  LA20249_RS10970 (LA20249_10955) rpiA 2284244..2284933 (-) 690 WP_057739107.1 ribose-5-phosphate isomerase RpiA -
  LA20249_RS10975 (LA20249_10960) - 2284934..2285236 (-) 303 WP_057739106.1 GNAT family N-acetyltransferase -
  LA20249_RS10980 (LA20249_10965) - 2285367..2285909 (+) 543 WP_057739105.1 dUTP diphosphatase -
  LA20249_RS10985 (LA20249_10970) radA 2285929..2287302 (+) 1374 WP_057739147.1 DNA repair protein RadA Machinery gene
  LA20249_RS10990 (LA20249_10975) - 2287313..2288584 (+) 1272 WP_057739104.1 PIN/TRAM domain-containing protein -
  LA20249_RS10995 (LA20249_10980) gltX 2288565..2290061 (+) 1497 WP_057739103.1 glutamate--tRNA ligase -
  LA20249_RS11000 (LA20249_10985) cysS 2290379..2291782 (+) 1404 WP_057739102.1 cysteine--tRNA ligase -
  LA20249_RS11005 (LA20249_10990) - 2291775..2292188 (+) 414 WP_057739101.1 Mini-ribonuclease 3 -

Sequence

Protein


Download         Length: 457 a.a.        Molecular weight: 50047.49 Da        Isoelectric Point: 7.3476

>NTDB_id=211143 LA20249_RS10985 WP_057739147.1 2285929..2287302(+) (radA) [Companilactobacillus alimentarius DSM 20249]
MAKAKTKFVCQNCSYVSPRYLGRCPNCGAWNQMVEEVEHPEAIKAKATPSRRVSDLESKPVSIDDVSFEKEPRIKTELSE
LNRVLGGGIVPGSLILIGGDPGIGKSTLLTQVSGQLASSGKVLYVSGEESASQIKMRADRLGISGKNLYLYPQTDMSYIR
DTISDMKPDYLIIDSVQTMDEPEITSAVGSISQIREVTAELMNIAKQDNITVFVVGHVTKGGAIAGPKILEHMVDTVLYF
EGDTHHSYRILRSVKNRFGSTNEIGIFEMRTKGLVEVTNPSEIFLEERLADTNGSAVVVSMEGTRPILVEIQSLITPTIF
GNAKRTATGLDHNRVSVIMAVLEKRGNLMLQNQDAYLKSTGGVKLDEPAIDLALAMSIASSYKNLGIPATDCFVGEVGLT
GEIRRVNRIDQRVNEAEKLGFKRIFIPKNNMGDWSKKNKIQIVGVSTVTDAMNKIFN

Nucleotide


Download         Length: 1374 bp        

>NTDB_id=211143 LA20249_RS10985 WP_057739147.1 2285929..2287302(+) (radA) [Companilactobacillus alimentarius DSM 20249]
TTGGCTAAAGCTAAAACAAAATTTGTATGTCAAAATTGTAGCTATGTTTCACCACGTTATTTGGGACGTTGTCCTAATTG
TGGGGCATGGAATCAAATGGTGGAAGAAGTTGAACATCCAGAAGCCATTAAGGCCAAAGCTACGCCAAGTCGTCGTGTGA
GTGATTTGGAATCTAAGCCGGTTAGTATTGATGATGTTTCATTTGAAAAGGAACCACGGATTAAAACAGAACTTTCAGAA
TTAAATCGTGTTTTAGGTGGCGGAATCGTTCCGGGATCATTGATCTTGATCGGTGGTGATCCAGGAATTGGTAAATCGAC
GCTTTTAACTCAAGTTTCAGGACAATTAGCTAGCAGCGGTAAAGTGTTGTACGTTTCTGGTGAAGAGAGCGCTTCGCAGA
TTAAGATGCGAGCTGATCGTTTAGGAATTTCAGGTAAGAATTTATATCTATATCCTCAGACTGACATGAGTTATATCAGA
GATACTATTTCCGATATGAAGCCTGATTATTTAATTATTGACTCGGTTCAGACAATGGACGAGCCAGAGATTACTTCAGC
AGTTGGGAGTATTTCTCAGATTCGAGAAGTAACGGCTGAATTGATGAATATTGCTAAACAAGATAACATTACAGTCTTTG
TCGTCGGTCATGTTACTAAAGGCGGTGCGATTGCTGGTCCCAAAATACTGGAACATATGGTTGATACTGTTCTATACTTT
GAAGGGGACACGCATCATAGTTATCGAATTTTACGTTCAGTTAAGAATCGTTTTGGATCGACTAATGAAATCGGTATTTT
TGAAATGAGGACAAAGGGATTAGTTGAGGTCACTAATCCTTCAGAGATTTTCTTAGAAGAACGATTGGCTGACACTAATG
GTTCAGCTGTGGTTGTCTCAATGGAAGGAACTAGACCAATTCTGGTTGAAATCCAATCATTAATTACCCCAACTATCTTC
GGTAATGCTAAGAGAACCGCAACTGGTTTGGATCACAATCGGGTTTCAGTTATCATGGCTGTTTTAGAAAAACGTGGTAA
CTTGATGCTTCAAAATCAAGATGCATATTTGAAGTCAACTGGGGGAGTTAAATTGGATGAACCAGCAATTGATTTGGCTT
TAGCAATGTCAATTGCATCAAGCTACAAAAATCTTGGTATTCCTGCGACTGACTGTTTTGTTGGCGAAGTAGGTTTGACA
GGCGAGATCCGCCGAGTCAATCGAATTGATCAACGAGTTAATGAAGCTGAGAAATTAGGCTTTAAACGAATATTTATTCC
CAAAAATAATATGGGTGATTGGTCTAAGAAAAACAAGATTCAAATTGTTGGCGTCAGCACTGTAACTGATGCGATGAACA
AAATTTTTAATTAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(366-430)

AAA domain (AAA_25)

(60-222)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2K9HLI3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis NCTC 12261

63.596

99.781

0.635
  radA Streptococcus pneumoniae Rx1

63.596

99.781

0.635
  radA Streptococcus pneumoniae D39

63.596

99.781

0.635
  radA Streptococcus pneumoniae R6

63.596

99.781

0.635
  radA Streptococcus pneumoniae TIGR4

63.596

99.781

0.635
  radA Streptococcus mitis SK321

63.596

99.781

0.635
  radA Bacillus subtilis subsp. subtilis str. 168

62.693

99.125

0.621

Multiple sequence alignment