Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   BC6307_RS16135 Genome accession   NZ_CP018866
Coordinates   3208642..3210990 (-) Length   782 a.a.
NCBI ID   WP_066420808.1    Uniprot ID   -
Organism   Sutcliffiella cohnii strain DSM 6307     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3203642..3215990
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BC6307_RS16120 (BC6307_16090) dtd 3205204..3205650 (-) 447 WP_066420804.1 D-aminoacyl-tRNA deacylase -
  BC6307_RS16125 (BC6307_16095) - 3205665..3207860 (-) 2196 WP_066420805.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  BC6307_RS16130 (BC6307_16100) - 3208115..3208627 (-) 513 WP_066420807.1 adenine phosphoribosyltransferase -
  BC6307_RS16135 (BC6307_16105) recJ 3208642..3210990 (-) 2349 WP_066420808.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  BC6307_RS16140 (BC6307_16110) - 3211414..3211692 (-) 279 WP_066420866.1 lipopolysaccharide assembly protein LapA domain-containing protein -
  BC6307_RS16145 (BC6307_16115) - 3211689..3212612 (-) 924 WP_066420867.1 cation diffusion facilitator family transporter -
  BC6307_RS16150 (BC6307_16120) secDF 3212857..3215109 (-) 2253 WP_066420865.1 protein translocase subunit SecDF -
  BC6307_RS16155 (BC6307_16125) - 3215526..3215801 (-) 276 WP_066420864.1 post-transcriptional regulator -

Sequence

Protein


Download         Length: 782 a.a.        Molecular weight: 89107.65 Da        Isoelectric Point: 5.3372

>NTDB_id=211094 BC6307_RS16135 WP_066420808.1 3208642..3210990(-) (recJ) [Sutcliffiella cohnii strain DSM 6307]
MLLSKSRWNIKKPNEEKVKELVDTLKVTPLIATLLVNRGIEDVEEASSFLNINEMDFHDPFLLEDMEKVVERIKTAVQKE
EKILVFGDYDADGVSSTTVLLTALQEIGARADFYIPNRFTEGYGPNETAFRWAKEQNYTLIITVDTGISAHHEGEVAKEL
GLDLIITDHHEPSPTLPESYAIIHPKKTTCSYPYKELAGVGVAFKVAHALLGRVPEHLIEIAAIGTIADLVPLTGENRLI
AYRGIRQMKSTTRAGLRALFQKCGVDMANITEETIGFTIGPRINAVGRLADADPAVHLLMATTYEEAVALVEEIDGYNKE
RQQIVAKITEEAIKQVEEKYPPEEHSFIIVEGYDWNAGVIGIVASRLVDKFYRPTIVLSLDDKTGLAKGSARSIKGFDLF
EHLSDCRDILPHFGGHPMAAGMTLEMKNVHELRTRMNRKASEILTEEDFIPITDVDMQCELEDISLQTIEQLERLAPYGV
ANPKPKVVVPNASLQQIRQIGSNNTHLKLMIEKNNESLDCVGFGFGDAYHEISPSCKIHVLGELSINEWNNIRKPQLFIQ
DIKIDEWQLFDIRSSKQLSNTLKQLNKEKARLVHFSSEALHDLPIAEEWKSNSLHIVDIENYRFSEETHLILLDLPTDEE
QLISLIKLAKPTRIYASFYQRENHFFSTIPTRDHFKWFYSLIMKKGSIDLNRYAEDIAKTRGWSKETVDFISQVFFELEF
VTIDNGFISLNSGSMKRDLTESRTYQKKQKQIELENKFLYSTYHQLKTWFDEHVNELRTVYS

Nucleotide


Download         Length: 2349 bp        

>NTDB_id=211094 BC6307_RS16135 WP_066420808.1 3208642..3210990(-) (recJ) [Sutcliffiella cohnii strain DSM 6307]
GTGTTATTATCAAAATCTCGTTGGAATATAAAAAAGCCAAATGAAGAAAAAGTGAAAGAGCTAGTAGACACATTAAAGGT
AACACCTCTAATTGCTACTCTTTTAGTCAATAGAGGCATTGAAGATGTAGAAGAAGCCTCATCTTTCCTTAATATTAATG
AAATGGATTTTCACGATCCATTCTTATTAGAAGATATGGAAAAAGTAGTAGAAAGAATCAAAACCGCTGTACAGAAAGAA
GAAAAAATTCTTGTCTTTGGTGACTATGATGCTGATGGTGTAAGCAGTACGACAGTTTTATTAACAGCACTTCAAGAAAT
CGGGGCAAGAGCGGACTTTTATATACCTAATCGTTTTACAGAAGGTTATGGACCAAACGAAACAGCCTTTCGATGGGCAA
AGGAACAGAATTATACGTTAATCATAACAGTTGATACAGGTATTTCTGCTCACCATGAAGGGGAAGTTGCGAAAGAGTTA
GGTCTTGACTTAATTATTACTGACCACCATGAACCAAGTCCAACATTACCAGAATCGTATGCTATTATTCACCCGAAAAA
AACAACATGCTCTTATCCTTATAAAGAGCTTGCTGGAGTAGGAGTCGCCTTTAAAGTAGCTCATGCACTGCTCGGTAGAG
TACCAGAACATTTAATAGAAATTGCAGCGATAGGAACAATTGCTGATTTAGTCCCTTTAACCGGGGAAAATCGATTAATC
GCGTATCGTGGTATTCGTCAAATGAAGAGTACAACAAGAGCGGGATTACGTGCTTTATTTCAAAAGTGCGGTGTGGACAT
GGCCAATATTACAGAAGAAACAATTGGCTTTACAATCGGTCCTAGAATAAACGCAGTTGGTCGGCTAGCAGATGCGGATC
CTGCTGTTCATCTATTAATGGCAACTACTTATGAGGAAGCAGTTGCGTTAGTAGAAGAAATAGATGGTTATAATAAAGAG
AGACAACAAATTGTTGCTAAAATTACAGAAGAAGCGATAAAACAAGTAGAAGAAAAATATCCTCCAGAAGAGCATTCTTT
CATTATTGTGGAAGGTTATGATTGGAATGCAGGGGTTATCGGAATTGTTGCCTCAAGATTAGTGGACAAGTTTTATCGTC
CAACAATCGTTTTAAGTCTTGATGATAAAACTGGTTTAGCGAAAGGATCAGCTCGCTCGATTAAGGGATTTGATCTTTTT
GAACATTTATCCGATTGCCGTGATATATTACCGCATTTCGGTGGACATCCAATGGCTGCTGGGATGACGTTAGAAATGAA
AAATGTTCATGAGCTACGCACTCGAATGAATAGAAAAGCTAGTGAGATATTAACAGAAGAGGATTTTATTCCTATTACAG
ATGTTGATATGCAATGCGAACTAGAAGACATTTCGCTGCAAACGATTGAACAACTGGAAAGACTCGCTCCGTATGGAGTT
GCTAATCCTAAACCAAAAGTAGTTGTTCCGAATGCATCTCTTCAACAAATACGACAAATTGGAAGTAATAATACACATCT
TAAATTAATGATTGAAAAAAATAACGAATCGTTAGATTGTGTAGGCTTTGGATTTGGGGATGCATATCATGAAATATCAC
CAAGTTGTAAAATTCATGTTTTAGGTGAGTTATCGATTAATGAATGGAATAATATAAGGAAACCACAGTTGTTTATTCAA
GATATCAAAATAGACGAATGGCAATTATTTGATATCCGTTCTAGTAAACAGTTATCCAATACGTTAAAACAATTAAATAA
AGAAAAAGCAAGGTTAGTTCATTTTTCGAGTGAGGCGTTACACGACTTGCCTATTGCAGAAGAGTGGAAAAGTAATTCAT
TGCATATAGTTGATATAGAAAATTATCGTTTTTCGGAGGAAACGCATTTAATATTATTAGATTTACCAACTGATGAAGAA
CAGTTAATTTCGTTAATTAAACTAGCTAAACCAACCCGAATATATGCCAGCTTTTACCAAAGAGAAAATCACTTTTTCTC
CACAATTCCTACTCGTGACCATTTTAAGTGGTTTTACAGCTTAATTATGAAAAAAGGATCAATCGATTTAAATCGATATG
CAGAAGATATCGCAAAAACTAGAGGTTGGTCAAAAGAAACAGTAGATTTTATATCACAGGTGTTTTTTGAATTAGAATTT
GTTACAATAGACAATGGCTTTATTTCATTAAATAGTGGGTCCATGAAACGAGACTTAACAGAATCGCGAACCTACCAGAA
GAAACAAAAGCAAATAGAGTTGGAAAATAAATTTTTATACTCAACGTATCACCAATTAAAAACGTGGTTTGATGAGCATG
TAAACGAACTACGAACCGTTTATTCATAG

Domains

Predicted by InterProScan.

DHH family (DHH)

(82-226)

RecJ OB domain (RecJ_OB)

(455-561)

DHHA1 domain (DHHA1)

(315-437)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(568-770)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

51.276

100

0.514

Multiple sequence alignment