Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   BC6307_RS14650 Genome accession   NZ_CP018866
Coordinates   2929100..2930788 (-) Length   562 a.a.
NCBI ID   WP_066412971.1    Uniprot ID   -
Organism   Sutcliffiella cohnii strain DSM 6307     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2924100..2935788
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BC6307_RS14625 (BC6307_14595) - 2924956..2925192 (+) 237 WP_066412980.1 DUF2627 domain-containing protein -
  BC6307_RS14630 (BC6307_14600) - 2925390..2926133 (-) 744 WP_066412977.1 glycerophosphodiester phosphodiesterase -
  BC6307_RS14635 (BC6307_14605) - 2926220..2926369 (+) 150 WP_084380230.1 YycC family protein -
  BC6307_RS14640 (BC6307_14610) spo0A 2926493..2927281 (-) 789 WP_066412973.1 sporulation transcription factor Spo0A -
  BC6307_RS14645 (BC6307_14615) spoIVB 2927546..2928838 (-) 1293 WP_094366141.1 SpoIVB peptidase -
  BC6307_RS14650 (BC6307_14620) recN 2929100..2930788 (-) 1689 WP_066412971.1 DNA repair protein RecN Machinery gene
  BC6307_RS14655 (BC6307_14625) argR 2930818..2931267 (-) 450 WP_066412969.1 transcriptional regulator ArgR -
  BC6307_RS14660 (BC6307_14630) - 2931474..2932307 (-) 834 WP_066412967.1 TlyA family RNA methyltransferase -
  BC6307_RS14665 (BC6307_14635) dxs 2932312..2934201 (-) 1890 WP_066412965.1 1-deoxy-D-xylulose-5-phosphate synthase -
  BC6307_RS14670 (BC6307_14640) - 2934221..2934826 (-) 606 WP_066412962.1 hypothetical protein -

Sequence

Protein


Download         Length: 562 a.a.        Molecular weight: 63600.24 Da        Isoelectric Point: 5.2683

>NTDB_id=211088 BC6307_RS14650 WP_066412971.1 2929100..2930788(-) (recN) [Sutcliffiella cohnii strain DSM 6307]
MIAELSIKNFAIIEAVSISFDKGLTVLTGETGAGKSIIIDAIHLLAGGRGSQEFVRHGEKRAEIEGLFLIESEKHPCIHV
CHELGIELDDNMVVLRREIHASGKSVCRVNGKLVTISVLREVGRTLVDIHGQHEHQELMNADLHIDLLDQFGNETINKCV
EAYNNVYDHYKSLEVRLNDLTTNEQQMAHRLDLIQFQLEEINNAKLQPKEEEELLAERNKISNYQKLFQALNNSYYSLHG
EQKGLDWVGHAMSETEALKAIDPKLGTIYETISNAYYQLEEASYHIRDEIDQLEYDPERLDFIEGRLSEIKQLKKKYGST
VEEILEYAAKIEEELETIQNKDSHIHKLQQELESVESDLLLEAKALTEARTKAAVTLEEKIHEQLRDLYLEKANFKVNVT
SHNKFQKNGVDAVEFYLTTNPGEPLKPLARVASGGELSRIMLAMKSIFSQHQGITSIIFDEVDTGVSGKVAQAIANKIYS
VSVESQVLCISHLPQVAAMSDTHLFISKEIDKDRTKTRVNILSTEEKVNEIGRMISGIEVTELTKKHAKELLQLANRQKE
IK

Nucleotide


Download         Length: 1689 bp        

>NTDB_id=211088 BC6307_RS14650 WP_066412971.1 2929100..2930788(-) (recN) [Sutcliffiella cohnii strain DSM 6307]
ATGATTGCAGAACTTTCGATAAAAAACTTTGCAATAATCGAAGCGGTATCTATTTCGTTTGATAAAGGTTTAACGGTATT
AACAGGTGAAACAGGTGCGGGTAAATCGATTATTATTGATGCCATCCACCTTTTAGCAGGTGGGCGAGGTTCGCAAGAAT
TTGTGAGGCATGGAGAAAAGAGGGCGGAAATTGAAGGTCTTTTTCTAATAGAAAGTGAAAAACATCCATGTATTCACGTT
TGTCATGAGCTTGGAATTGAATTAGATGATAATATGGTCGTGCTTCGTAGGGAAATTCATGCATCAGGAAAAAGTGTTTG
TAGAGTGAACGGGAAATTAGTAACTATTTCCGTTTTAAGAGAAGTTGGGCGTACGTTAGTAGACATTCACGGGCAGCACG
AACATCAAGAATTAATGAATGCTGATTTACATATCGACCTATTAGATCAATTCGGAAATGAAACGATAAACAAGTGTGTG
GAAGCGTACAATAACGTATACGATCATTATAAAAGTTTAGAGGTAAGATTGAATGATTTAACGACAAATGAACAACAAAT
GGCACATCGGTTAGATTTAATTCAGTTCCAACTAGAAGAAATTAATAATGCTAAACTACAGCCGAAAGAAGAGGAAGAAC
TACTGGCTGAAAGAAATAAAATTAGTAACTATCAAAAACTTTTCCAAGCGTTAAACAATAGCTATTATAGTCTTCATGGT
GAACAAAAAGGGTTAGATTGGGTTGGACATGCTATGAGTGAAACGGAAGCGCTAAAGGCAATCGATCCAAAATTGGGTAC
CATTTATGAAACCATTTCTAATGCCTATTATCAATTGGAAGAAGCTTCTTATCATATTCGTGATGAGATTGACCAATTAG
AATATGACCCAGAACGTTTAGATTTTATAGAAGGTCGATTAAGTGAAATAAAGCAATTAAAAAAGAAGTATGGAAGTACT
GTAGAAGAGATTTTAGAATATGCGGCAAAAATTGAAGAAGAACTCGAAACGATTCAAAATAAAGATTCTCACATCCACAA
ACTACAGCAGGAGCTTGAATCGGTTGAATCAGACCTTTTGTTAGAAGCGAAAGCTTTAACTGAAGCTAGAACGAAGGCTG
CTGTAACATTAGAAGAGAAAATTCACGAACAGCTACGAGATCTTTATTTAGAAAAAGCAAACTTCAAAGTAAACGTTACT
TCTCATAATAAATTTCAAAAAAATGGTGTAGATGCAGTAGAATTTTATTTAACGACAAATCCAGGCGAACCGTTAAAACC
GTTAGCGAGAGTTGCTTCAGGTGGAGAGTTATCGCGTATAATGCTAGCGATGAAAAGTATCTTTTCCCAACATCAAGGTA
TTACATCGATTATTTTTGATGAAGTAGATACTGGTGTAAGTGGAAAAGTGGCTCAAGCAATTGCAAACAAAATTTATTCT
GTTTCGGTGGAATCACAAGTTCTTTGTATTTCACATTTACCACAAGTCGCTGCAATGAGCGATACGCATTTATTTATTAG
TAAAGAAATTGATAAAGACCGAACAAAAACAAGAGTTAACATTCTTTCAACCGAAGAAAAGGTTAACGAAATTGGACGAA
TGATATCAGGTATAGAAGTTACGGAACTTACGAAAAAACATGCAAAAGAATTGTTACAACTCGCTAATCGCCAAAAAGAA
ATTAAATAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-508)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

58.014

100

0.593

Multiple sequence alignment